JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 20:17 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1rl6a1.name2015-04-17 17:56 0 Job name flag file
[ ]jp_qcH9NFN.align2015-04-17 20:17 87KPSIBLAST alignment in FASTA format
[TXT]jp_qcH9NFN.als2015-04-17 20:17 2.2KAlscript command file for PS/PDF output
[ ]jp_qcH9NFN.blast.gz2015-04-17 20:16 1.2MCompressed PSIBLAST output file
[TXT]jp_qcH9NFN.coils.csv2015-04-17 20:17 480 COILS output in CSV format
[ ]jp_qcH9NFN.coilseq.lupas_142015-04-17 20:17 3.1KCOILS output, window length 14
[ ]jp_qcH9NFN.coilseq.lupas_212015-04-17 20:17 3.1KCOILS output, window length 21
[ ]jp_qcH9NFN.coilseq.lupas_282015-04-17 20:17 3.1KCOILS output, window length 28
[ ]jp_qcH9NFN.concise2015-04-17 20:17 165KPrediction: coiled-coil, solvent, alignment
[ ]jp_qcH9NFN.concise.blc2015-04-17 20:17 86KBLC format prediction and alignment data
[ ]jp_qcH9NFN.concise.fasta2015-04-17 20:17 88KPrediction: coiled-coil, solvent, alignment
[ ]jp_qcH9NFN.concise.pdf2015-04-17 20:17 568KPDF prediction and alignment data
[ ]jp_qcH9NFN.concise.ps2015-04-17 20:17 9.6MPrediction: coiled-coil, solvent, alignment
[ ]jp_qcH9NFN.fasta2015-04-17 19:28 89 Input query sequence in FASTA format
[ ]jp_qcH9NFN.full_MSA.fasta2015-04-17 20:16 2.7MFull MSA before JPred filters in FASTA
[TXT]jp_qcH9NFN.full_MSA.fasta.noGaps.html2015-04-17 20:17 732KFull MSA before JPred filters in FASTA
[TXT]jp_qcH9NFN.full_MSA.fasta.withGaps.html2015-04-17 20:17 7.8MFull MSA before JPred filters in FASTA
[ ]jp_qcH9NFN.hmm2015-04-17 20:17 14KHHMer2 profile of the alignment
[TXT]jp_qcH9NFN.html2015-04-17 20:17 275KHTML prediction and alignment data
[ ]jp_qcH9NFN.input2015-04-17 17:56 82 Raw input data for analysis
[ ]jp_qcH9NFN.jalview2015-04-17 20:17 2.3KJalview annotation file for alignment
[ ]jp_qcH9NFN.jnet2015-04-17 20:17 2.8KJnet secondary structure output
[TXT]jp_qcH9NFN.profile2015-04-17 20:14 12KPSIBLAST profile from alignment
[ ]jp_qcH9NFN.pssm2015-04-17 20:17 16KPSIBLAST PSSM for Jnet
[TXT]jp_qcH9NFN.results.html2016-02-15 12:18 41KJPred results page
[TXT]jp_qcH9NFN.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_qcH9NFN.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_qcH9NFN.seq2015-04-17 17:56 89 Sequence data file
[TXT]jp_qcH9NFN.simple.html2015-04-17 20:17 1.2KBrief HTML: sequence and prediction only
[TXT]jp_qcH9NFN.svg.html2015-04-17 20:17 33KJalview SVG summary of results
[ ]jp_qcH9NFN.tar.gz2015-04-17 20:17 2.7MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.