JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 20:30 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1rwha1.name2015-04-17 18:31 0 Job name flag file
[ ]jp_6LKStYw.align2015-04-17 20:29 183KPSIBLAST alignment in FASTA format
[TXT]jp_6LKStYw.als2015-04-17 20:29 4.0KAlscript command file for PS/PDF output
[ ]jp_6LKStYw.blast.gz2015-04-17 20:29 971KCompressed PSIBLAST output file
[TXT]jp_6LKStYw.coils.csv2015-04-17 20:29 2.2KCOILS output in CSV format
[ ]jp_6LKStYw.coilseq.lupas_142015-04-17 20:29 15KCOILS output, window length 14
[ ]jp_6LKStYw.coilseq.lupas_212015-04-17 20:29 15KCOILS output, window length 21
[ ]jp_6LKStYw.coilseq.lupas_282015-04-17 20:29 15KCOILS output, window length 28
[ ]jp_6LKStYw.concise2015-04-17 20:29 372KPrediction: coiled-coil, solvent, alignment
[ ]jp_6LKStYw.concise.blc2015-04-17 20:29 186KBLC format prediction and alignment data
[ ]jp_6LKStYw.concise.fasta2015-04-17 20:29 187KPrediction: coiled-coil, solvent, alignment
[ ]jp_6LKStYw.concise.pdf2015-04-17 20:30 1.2MPDF prediction and alignment data
[ ]jp_6LKStYw.concise.ps2015-04-17 20:30 23MPrediction: coiled-coil, solvent, alignment
[ ]jp_6LKStYw.fasta2015-04-17 20:25 387 Input query sequence in FASTA format
[ ]jp_6LKStYw.full_MSA.fasta2015-04-17 20:29 1.5MFull MSA before JPred filters in FASTA
[TXT]jp_6LKStYw.full_MSA.fasta.noGaps.html2015-04-17 20:30 336KFull MSA before JPred filters in FASTA
[TXT]jp_6LKStYw.full_MSA.fasta.withGaps.html2015-04-17 20:30 6.3MFull MSA before JPred filters in FASTA
[ ]jp_6LKStYw.hmm2015-04-17 20:29 69KHHMer2 profile of the alignment
[TXT]jp_6LKStYw.html2015-04-17 20:29 310KHTML prediction and alignment data
[ ]jp_6LKStYw.input2015-04-17 18:31 376 Raw input data for analysis
[ ]jp_6LKStYw.jalview2015-04-17 20:29 8.3KJalview annotation file for alignment
[ ]jp_6LKStYw.jnet2015-04-17 20:29 13KJnet secondary structure output
[TXT]jp_6LKStYw.profile2015-04-17 20:27 59KPSIBLAST profile from alignment
[ ]jp_6LKStYw.pssm2015-04-17 20:29 79KPSIBLAST PSSM for Jnet
[TXT]jp_6LKStYw.results.html2016-02-15 12:18 153KJPred results page
[TXT]jp_6LKStYw.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_6LKStYw.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_6LKStYw.seq2015-04-17 18:31 387 Sequence data file
[TXT]jp_6LKStYw.simple.html2015-04-17 20:29 2.0KBrief HTML: sequence and prediction only
[TXT]jp_6LKStYw.svg.html2015-04-17 20:30 145KJalview SVG summary of results
[ ]jp_6LKStYw.tar.gz2015-04-17 20:30 3.1MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.