JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:36 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1ryla_.name2015-04-17 19:10 0 Job name flag file
[ ]jp_zCu4UWP.align2015-04-17 21:36 51KPSIBLAST alignment in FASTA format
[TXT]jp_zCu4UWP.als2015-04-17 21:36 2.8KAlscript command file for PS/PDF output
[ ]jp_zCu4UWP.blast.gz2015-04-17 21:36 156KCompressed PSIBLAST output file
[TXT]jp_zCu4UWP.coils.csv2015-04-17 21:36 972 COILS output in CSV format
[ ]jp_zCu4UWP.coilseq.lupas_142015-04-17 21:36 6.6KCOILS output, window length 14
[ ]jp_zCu4UWP.coilseq.lupas_212015-04-17 21:36 6.6KCOILS output, window length 21
[ ]jp_zCu4UWP.coilseq.lupas_282015-04-17 21:36 6.6KCOILS output, window length 28
[ ]jp_zCu4UWP.concise2015-04-17 21:36 104KPrediction: coiled-coil, solvent, alignment
[ ]jp_zCu4UWP.concise.blc2015-04-17 21:36 52KBLC format prediction and alignment data
[ ]jp_zCu4UWP.concise.fasta2015-04-17 21:36 53KPrediction: coiled-coil, solvent, alignment
[ ]jp_zCu4UWP.concise.pdf2015-04-17 21:36 358KPDF prediction and alignment data
[ ]jp_zCu4UWP.concise.ps2015-04-17 21:36 6.2MPrediction: coiled-coil, solvent, alignment
[ ]jp_zCu4UWP.fasta2015-04-17 21:33 172 Input query sequence in FASTA format
[ ]jp_zCu4UWP.full_MSA.fasta2015-04-17 21:36 315KFull MSA before JPred filters in FASTA
[TXT]jp_zCu4UWP.full_MSA.fasta.noGaps.html2015-04-17 21:36 106KFull MSA before JPred filters in FASTA
[TXT]jp_zCu4UWP.full_MSA.fasta.withGaps.html2015-04-17 21:36 1.1MFull MSA before JPred filters in FASTA
[ ]jp_zCu4UWP.hmm2015-04-17 21:36 29KHHMer2 profile of the alignment
[TXT]jp_zCu4UWP.html2015-04-17 21:36 123KHTML prediction and alignment data
[ ]jp_zCu4UWP.input2015-04-17 19:10 164 Raw input data for analysis
[ ]jp_zCu4UWP.jalview2015-04-17 21:36 4.0KJalview annotation file for alignment
[ ]jp_zCu4UWP.jnet2015-04-17 21:36 5.8KJnet secondary structure output
[TXT]jp_zCu4UWP.profile2015-04-17 21:35 25KPSIBLAST profile from alignment
[ ]jp_zCu4UWP.pssm2015-04-17 21:36 34KPSIBLAST PSSM for Jnet
[TXT]jp_zCu4UWP.results.html2016-02-15 12:18 72KJPred results page
[TXT]jp_zCu4UWP.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_zCu4UWP.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_zCu4UWP.seq2015-04-17 19:10 172 Sequence data file
[TXT]jp_zCu4UWP.simple.html2015-04-17 21:36 1.4KBrief HTML: sequence and prediction only
[TXT]jp_zCu4UWP.svg.html2015-04-17 21:36 64KJalview SVG summary of results
[ ]jp_zCu4UWP.tar.gz2015-04-17 21:36 785KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.