JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:35 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1s0pa_.name2015-04-17 16:06 0 Job name flag file
[ ]jp_kqXsLTd.align2015-04-17 16:34 58KPSIBLAST alignment in FASTA format
[TXT]jp_kqXsLTd.als2015-04-17 16:34 2.4KAlscript command file for PS/PDF output
[ ]jp_kqXsLTd.blast.gz2015-04-17 16:34 256KCompressed PSIBLAST output file
[TXT]jp_kqXsLTd.coils.csv2015-04-17 16:34 1.1KCOILS output in CSV format
[ ]jp_kqXsLTd.coilseq.lupas_142015-04-17 16:34 7.4KCOILS output, window length 14
[ ]jp_kqXsLTd.coilseq.lupas_212015-04-17 16:34 7.4KCOILS output, window length 21
[ ]jp_kqXsLTd.coilseq.lupas_282015-04-17 16:34 7.4KCOILS output, window length 28
[ ]jp_kqXsLTd.concise2015-04-17 16:34 120KPrediction: coiled-coil, solvent, alignment
[ ]jp_kqXsLTd.concise.blc2015-04-17 16:34 60KBLC format prediction and alignment data
[ ]jp_kqXsLTd.concise.fasta2015-04-17 16:34 60KPrediction: coiled-coil, solvent, alignment
[ ]jp_kqXsLTd.concise.pdf2015-04-17 16:34 410KPDF prediction and alignment data
[ ]jp_kqXsLTd.concise.ps2015-04-17 16:34 7.2MPrediction: coiled-coil, solvent, alignment
[ ]jp_kqXsLTd.fasta2015-04-17 16:30 191 Input query sequence in FASTA format
[ ]jp_kqXsLTd.full_MSA.fasta2015-04-17 16:34 281KFull MSA before JPred filters in FASTA
[TXT]jp_kqXsLTd.full_MSA.fasta.noGaps.html2015-04-17 16:34 164KFull MSA before JPred filters in FASTA
[TXT]jp_kqXsLTd.full_MSA.fasta.withGaps.html2015-04-17 16:34 1.3MFull MSA before JPred filters in FASTA
[ ]jp_kqXsLTd.hmm2015-04-17 16:34 33KHHMer2 profile of the alignment
[TXT]jp_kqXsLTd.html2015-04-17 16:34 137KHTML prediction and alignment data
[ ]jp_kqXsLTd.input2015-04-17 16:06 183 Raw input data for analysis
[ ]jp_kqXsLTd.jalview2015-04-17 16:34 4.5KJalview annotation file for alignment
[ ]jp_kqXsLTd.jnet2015-04-17 16:34 6.5KJnet secondary structure output
[TXT]jp_kqXsLTd.profile2015-04-17 16:31 28KPSIBLAST profile from alignment
[ ]jp_kqXsLTd.pssm2015-04-17 16:34 38KPSIBLAST PSSM for Jnet
[TXT]jp_kqXsLTd.results.html2016-02-15 12:18 79KJPred results page
[TXT]jp_kqXsLTd.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_kqXsLTd.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_kqXsLTd.seq2015-04-17 16:06 191 Sequence data file
[TXT]jp_kqXsLTd.simple.html2015-04-17 16:34 1.4KBrief HTML: sequence and prediction only
[TXT]jp_kqXsLTd.svg.html2015-04-17 16:35 70KJalview SVG summary of results
[ ]jp_kqXsLTd.tar.gz2015-04-17 16:35 931KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.