A Protein Secondary Structure Prediction Server
| Name | Last modified | Size | Description | |
|---|---|---|---|---|
![[TXT]](/icons/text.gif){kind=icon} | LOG | 2015-04-17 20:29 | 4.7K | JPred server log file |
| README | 2016-02-15 12:18 | 2.1K | Results file descriptions |
| d1sf9a_.name | 2015-04-17 18:31 | 0 | Job name flag file |
![[ ]](/icons/unknown.gif){kind=icon} | jp_Ba_lUtt.align | 2015-04-17 20:29 | 14K | PSIBLAST alignment in FASTA format |
| jp_Ba_lUtt.als | 2015-04-17 20:29 | 2.2K | Alscript command file for PS/PDF output |
![[ ]](/icons/compressed.gif){kind=icon} | jp_Ba_lUtt.blast.gz | 2015-04-17 20:29 | 34K | Compressed PSIBLAST output file |
| jp_Ba_lUtt.coils.csv | 2015-04-17 20:29 | 738 | COILS output in CSV format |
| jp_Ba_lUtt.coilseq.lupas_14 | 2015-04-17 20:29 | 5.0K | COILS output, window length 14 |
| jp_Ba_lUtt.coilseq.lupas_21 | 2015-04-17 20:29 | 5.0K | COILS output, window length 21 |
| jp_Ba_lUtt.coilseq.lupas_28 | 2015-04-17 20:29 | 5.0K | COILS output, window length 28 |
| jp_Ba_lUtt.concise | 2015-04-17 20:29 | 32K | Prediction: coiled-coil, solvent, alignment |
| jp_Ba_lUtt.concise.blc | 2015-04-17 20:29 | 16K | BLC format prediction and alignment data |
| jp_Ba_lUtt.concise.fasta | 2015-04-17 20:29 | 15K | Prediction: coiled-coil, solvent, alignment |
![[ ]](/icons/layout.gif){kind=icon} | jp_Ba_lUtt.concise.pdf | 2015-04-17 20:29 | 91K | PDF prediction and alignment data |
| jp_Ba_lUtt.concise.ps | 2015-04-17 20:29 | 1.7M | Prediction: coiled-coil, solvent, alignment |
| jp_Ba_lUtt.fasta | 2015-04-17 20:26 | 132 | Input query sequence in FASTA format |
| jp_Ba_lUtt.full_MSA.fasta | 2015-04-17 20:29 | 28K | Full MSA before JPred filters in FASTA |
| jp_Ba_lUtt.full_MSA.fasta.noGaps.html | 2015-04-17 20:29 | 38K | Full MSA before JPred filters in FASTA |
| jp_Ba_lUtt.full_MSA.fasta.withGaps.html | 2015-04-17 20:29 | 119K | Full MSA before JPred filters in FASTA |
| jp_Ba_lUtt.hmm | 2015-04-17 20:29 | 22K | HHMer2 profile of the alignment |
| jp_Ba_lUtt.html | 2015-04-17 20:29 | 47K | HTML prediction and alignment data |
| jp_Ba_lUtt.input | 2015-04-17 18:31 | 125 | Raw input data for analysis |
| jp_Ba_lUtt.jalview | 2015-04-17 20:29 | 3.2K | Jalview annotation file for alignment |
| jp_Ba_lUtt.jnet | 2015-04-17 20:29 | 4.4K | Jnet secondary structure output |
| jp_Ba_lUtt.profile | 2015-04-17 20:28 | 19K | PSIBLAST profile from alignment |
| jp_Ba_lUtt.pssm | 2015-04-17 20:29 | 25K | PSIBLAST PSSM for Jnet |
| jp_Ba_lUtt.results.html | 2016-02-15 12:18 | 57K | JPred results page |
| jp_Ba_lUtt.results_jalview.html | 2016-02-24 17:17 | 13K | Jalview results options |
| jp_Ba_lUtt.results_jalview_app.html | 2016-02-24 17:17 | 16K | HTML prediction and alignment data |
| jp_Ba_lUtt.seq | 2015-04-17 18:31 | 132 | Sequence data file |
| jp_Ba_lUtt.simple.html | 2015-04-17 20:29 | 1.2K | Brief HTML: sequence and prediction only |
![[TXT]](jp_Ba_lUtt.svg.html) | jp_Ba_lUtt.svg.html | 2015-04-17 20:29 | 49K | Jalview SVG summary of results |
| jp_Ba_lUtt.tar.gz | 2015-04-17 20:29 | 188K | Archive containing complete results |
