JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:31 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1svba2.name2015-04-17 16:43 0 Job name flag file
[ ]jp_yKBQPP2.align2015-04-17 17:31 29KPSIBLAST alignment in FASTA format
[TXT]jp_yKBQPP2.als2015-04-17 17:31 4.7KAlscript command file for PS/PDF output
[ ]jp_yKBQPP2.blast.gz2015-04-17 17:31 98KCompressed PSIBLAST output file
[TXT]jp_yKBQPP2.coils.csv2015-04-17 17:31 1.8KCOILS output in CSV format
[ ]jp_yKBQPP2.coilseq.lupas_142015-04-17 17:31 13KCOILS output, window length 14
[ ]jp_yKBQPP2.coilseq.lupas_212015-04-17 17:31 13KCOILS output, window length 21
[ ]jp_yKBQPP2.coilseq.lupas_282015-04-17 17:31 13KCOILS output, window length 28
[ ]jp_yKBQPP2.concise2015-04-17 17:31 69KPrediction: coiled-coil, solvent, alignment
[ ]jp_yKBQPP2.concise.blc2015-04-17 17:31 33KBLC format prediction and alignment data
[ ]jp_yKBQPP2.concise.fasta2015-04-17 17:31 32KPrediction: coiled-coil, solvent, alignment
[ ]jp_yKBQPP2.concise.pdf2015-04-17 17:31 204KPDF prediction and alignment data
[ ]jp_yKBQPP2.concise.ps2015-04-17 17:31 3.9MPrediction: coiled-coil, solvent, alignment
[ ]jp_yKBQPP2.fasta2015-04-17 17:28 319 Input query sequence in FASTA format
[ ]jp_yKBQPP2.full_MSA.fasta2015-04-17 17:31 135KFull MSA before JPred filters in FASTA
[TXT]jp_yKBQPP2.full_MSA.fasta.noGaps.html2015-04-17 17:31 120KFull MSA before JPred filters in FASTA
[TXT]jp_yKBQPP2.full_MSA.fasta.withGaps.html2015-04-17 17:31 404KFull MSA before JPred filters in FASTA
[ ]jp_yKBQPP2.hmm2015-04-17 17:31 57KHHMer2 profile of the alignment
[TXT]jp_yKBQPP2.html2015-04-17 17:31 72KHTML prediction and alignment data
[ ]jp_yKBQPP2.input2015-04-17 16:43 309 Raw input data for analysis
[ ]jp_yKBQPP2.jalview2015-04-17 17:31 6.9KJalview annotation file for alignment
[ ]jp_yKBQPP2.jnet2015-04-17 17:31 11KJnet secondary structure output
[TXT]jp_yKBQPP2.profile2015-04-17 17:30 48KPSIBLAST profile from alignment
[ ]jp_yKBQPP2.pssm2015-04-17 17:31 65KPSIBLAST PSSM for Jnet
[TXT]jp_yKBQPP2.results.html2016-02-15 12:18 128KJPred results page
[TXT]jp_yKBQPP2.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_yKBQPP2.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_yKBQPP2.seq2015-04-17 16:43 319 Sequence data file
[TXT]jp_yKBQPP2.simple.html2015-04-17 17:31 2.0KBrief HTML: sequence and prediction only
[TXT]jp_yKBQPP2.svg.html2015-04-17 17:31 120KJalview SVG summary of results
[ ]jp_yKBQPP2.tar.gz2015-04-17 17:31 428KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.