JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:17 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1t1ua1.name2015-04-17 17:21 0 Job name flag file
[ ]jp_Z_jgQZV.align2015-04-17 19:15 244KPSIBLAST alignment in FASTA format
[TXT]jp_Z_jgQZV.als2015-04-17 19:16 4.7KAlscript command file for PS/PDF output
[ ]jp_Z_jgQZV.blast.gz2015-04-17 19:14 4.9MCompressed PSIBLAST output file
[TXT]jp_Z_jgQZV.coils.csv2015-04-17 19:16 2.3KCOILS output in CSV format
[ ]jp_Z_jgQZV.coilseq.lupas_142015-04-17 19:16 16KCOILS output, window length 14
[ ]jp_Z_jgQZV.coilseq.lupas_212015-04-17 19:16 16KCOILS output, window length 21
[ ]jp_Z_jgQZV.coilseq.lupas_282015-04-17 19:16 16KCOILS output, window length 28
[ ]jp_Z_jgQZV.concise2015-04-17 19:16 492KPrediction: coiled-coil, solvent, alignment
[ ]jp_Z_jgQZV.concise.blc2015-04-17 19:16 246KBLC format prediction and alignment data
[ ]jp_Z_jgQZV.concise.fasta2015-04-17 19:16 248KPrediction: coiled-coil, solvent, alignment
[ ]jp_Z_jgQZV.concise.pdf2015-04-17 19:16 1.7MPDF prediction and alignment data
[ ]jp_Z_jgQZV.concise.ps2015-04-17 19:16 31MPrediction: coiled-coil, solvent, alignment
[ ]jp_Z_jgQZV.fasta2015-04-17 18:26 400 Input query sequence in FASTA format
[ ]jp_Z_jgQZV.full_MSA.fasta2015-04-17 19:15 8.9MFull MSA before JPred filters in FASTA
[TXT]jp_Z_jgQZV.full_MSA.fasta.noGaps.html2015-04-17 19:16 1.0MFull MSA before JPred filters in FASTA
[TXT]jp_Z_jgQZV.full_MSA.fasta.withGaps.html2015-04-17 19:16 24MFull MSA before JPred filters in FASTA
[ ]jp_Z_jgQZV.hmm2015-04-17 19:15 72KHHMer2 profile of the alignment
[TXT]jp_Z_jgQZV.html2015-04-17 19:16 397KHTML prediction and alignment data
[ ]jp_Z_jgQZV.input2015-04-17 17:21 389 Raw input data for analysis
[ ]jp_Z_jgQZV.jalview2015-04-17 19:16 8.5KJalview annotation file for alignment
[ ]jp_Z_jgQZV.jnet2015-04-17 19:16 14KJnet secondary structure output
[TXT]jp_Z_jgQZV.profile2015-04-17 18:58 61KPSIBLAST profile from alignment
[ ]jp_Z_jgQZV.pssm2015-04-17 19:15 82KPSIBLAST PSSM for Jnet
[TXT]jp_Z_jgQZV.results.html2016-02-15 12:18 159KJPred results page
[TXT]jp_Z_jgQZV.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_Z_jgQZV.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_Z_jgQZV.seq2015-04-17 17:21 400 Sequence data file
[TXT]jp_Z_jgQZV.simple.html2015-04-17 19:16 2.2KBrief HTML: sequence and prediction only
[TXT]jp_Z_jgQZV.svg.html2015-04-17 19:17 151KJalview SVG summary of results
[ ]jp_Z_jgQZV.tar.gz2015-04-17 19:17 9.6MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.