JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:41 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1t6ua_.name2015-04-17 19:11 0 Job name flag file
[ ]jp__ViM0jL.align2015-04-17 21:41 15KPSIBLAST alignment in FASTA format
[TXT]jp__ViM0jL.als2015-04-17 21:41 1.8KAlscript command file for PS/PDF output
[ ]jp__ViM0jL.blast.gz2015-04-17 21:41 57KCompressed PSIBLAST output file
[TXT]jp__ViM0jL.coils.csv2015-04-17 21:41 732 COILS output in CSV format
[ ]jp__ViM0jL.coilseq.lupas_142015-04-17 21:41 4.9KCOILS output, window length 14
[ ]jp__ViM0jL.coilseq.lupas_212015-04-17 21:41 4.9KCOILS output, window length 21
[ ]jp__ViM0jL.coilseq.lupas_282015-04-17 21:41 4.9KCOILS output, window length 28
[ ]jp__ViM0jL.concise2015-04-17 21:41 33KPrediction: coiled-coil, solvent, alignment
[ ]jp__ViM0jL.concise.blc2015-04-17 21:41 16KBLC format prediction and alignment data
[ ]jp__ViM0jL.concise.fasta2015-04-17 21:41 16KPrediction: coiled-coil, solvent, alignment
[ ]jp__ViM0jL.concise.pdf2015-04-17 21:41 108KPDF prediction and alignment data
[ ]jp__ViM0jL.concise.ps2015-04-17 21:41 1.9MPrediction: coiled-coil, solvent, alignment
[ ]jp__ViM0jL.fasta2015-04-17 21:35 131 Input query sequence in FASTA format
[ ]jp__ViM0jL.full_MSA.fasta2015-04-17 21:41 70KFull MSA before JPred filters in FASTA
[TXT]jp__ViM0jL.full_MSA.fasta.noGaps.html2015-04-17 21:41 49KFull MSA before JPred filters in FASTA
[TXT]jp__ViM0jL.full_MSA.fasta.withGaps.html2015-04-17 21:41 244KFull MSA before JPred filters in FASTA
[ ]jp__ViM0jL.hmm2015-04-17 21:41 22KHHMer2 profile of the alignment
[TXT]jp__ViM0jL.html2015-04-17 21:41 51KHTML prediction and alignment data
[ ]jp__ViM0jL.input2015-04-17 19:11 124 Raw input data for analysis
[ ]jp__ViM0jL.jalview2015-04-17 21:41 3.2KJalview annotation file for alignment
[ ]jp__ViM0jL.jnet2015-04-17 21:41 4.3KJnet secondary structure output
[TXT]jp__ViM0jL.profile2015-04-17 21:39 19KPSIBLAST profile from alignment
[ ]jp__ViM0jL.pssm2015-04-17 21:41 25KPSIBLAST PSSM for Jnet
[TXT]jp__ViM0jL.results.html2016-02-15 12:18 55KJPred results page
[TXT]jp__ViM0jL.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp__ViM0jL.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp__ViM0jL.seq2015-04-17 19:11 131 Sequence data file
[TXT]jp__ViM0jL.simple.html2015-04-17 21:41 1.2KBrief HTML: sequence and prediction only
[TXT]jp__ViM0jL.svg.html2015-04-17 21:41 47KJalview SVG summary of results
[ ]jp__ViM0jL.tar.gz2015-04-17 21:41 247KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.