JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:38 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1t9ia_.name2015-04-17 16:07 0 Job name flag file
[ ]jp_G3QCzvX.align2015-04-17 16:38 154KPSIBLAST alignment in FASTA format
[TXT]jp_G3QCzvX.als2015-04-17 16:38 2.8KAlscript command file for PS/PDF output
[ ]jp_G3QCzvX.blast.gz2015-04-17 16:38 319KCompressed PSIBLAST output file
[TXT]jp_G3QCzvX.coils.csv2015-04-17 16:38 948 COILS output in CSV format
[ ]jp_G3QCzvX.coilseq.lupas_142015-04-17 16:38 6.4KCOILS output, window length 14
[ ]jp_G3QCzvX.coilseq.lupas_212015-04-17 16:38 6.4KCOILS output, window length 21
[ ]jp_G3QCzvX.coilseq.lupas_282015-04-17 16:38 6.4KCOILS output, window length 28
[ ]jp_G3QCzvX.concise2015-04-17 16:38 302KPrediction: coiled-coil, solvent, alignment
[ ]jp_G3QCzvX.concise.blc2015-04-17 16:38 154KBLC format prediction and alignment data
[ ]jp_G3QCzvX.concise.fasta2015-04-17 16:38 156KPrediction: coiled-coil, solvent, alignment
[ ]jp_G3QCzvX.concise.pdf2015-04-17 16:38 936KPDF prediction and alignment data
[ ]jp_G3QCzvX.concise.ps2015-04-17 16:38 18MPrediction: coiled-coil, solvent, alignment
[ ]jp_G3QCzvX.fasta2015-04-17 16:31 168 Input query sequence in FASTA format
[ ]jp_G3QCzvX.full_MSA.fasta2015-04-17 16:38 1.1MFull MSA before JPred filters in FASTA
[TXT]jp_G3QCzvX.full_MSA.fasta.noGaps.html2015-04-17 16:38 289KFull MSA before JPred filters in FASTA
[TXT]jp_G3QCzvX.full_MSA.fasta.withGaps.html2015-04-17 16:38 4.4MFull MSA before JPred filters in FASTA
[ ]jp_G3QCzvX.hmm2015-04-17 16:38 29KHHMer2 profile of the alignment
[TXT]jp_G3QCzvX.html2015-04-17 16:38 345KHTML prediction and alignment data
[ ]jp_G3QCzvX.input2015-04-17 16:07 160 Raw input data for analysis
[ ]jp_G3QCzvX.jalview2015-04-17 16:38 3.9KJalview annotation file for alignment
[ ]jp_G3QCzvX.jnet2015-04-17 16:38 5.6KJnet secondary structure output
[TXT]jp_G3QCzvX.profile2015-04-17 16:35 25KPSIBLAST profile from alignment
[ ]jp_G3QCzvX.pssm2015-04-17 16:38 33KPSIBLAST PSSM for Jnet
[TXT]jp_G3QCzvX.results.html2016-02-15 12:18 71KJPred results page
[TXT]jp_G3QCzvX.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_G3QCzvX.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_G3QCzvX.seq2015-04-17 16:07 168 Sequence data file
[TXT]jp_G3QCzvX.simple.html2015-04-17 16:38 1.4KBrief HTML: sequence and prediction only
[TXT]jp_G3QCzvX.svg.html2015-04-17 16:38 63KJalview SVG summary of results
[ ]jp_G3QCzvX.tar.gz2015-04-17 16:38 1.8MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.