JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:16 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1td6a_.name2015-04-17 17:21 0 Job name flag file
[ ]jp_z6NwreT.align2015-04-17 19:16 27KPSIBLAST alignment in FASTA format
[TXT]jp_z6NwreT.als2015-04-17 19:16 3.5KAlscript command file for PS/PDF output
[ ]jp_z6NwreT.blast.gz2015-04-17 19:16 30KCompressed PSIBLAST output file
[TXT]jp_z6NwreT.coils.csv2015-04-17 19:16 1.7KCOILS output in CSV format
[ ]jp_z6NwreT.coilseq.lupas_142015-04-17 19:16 12KCOILS output, window length 14
[ ]jp_z6NwreT.coilseq.lupas_212015-04-17 19:16 12KCOILS output, window length 21
[ ]jp_z6NwreT.coilseq.lupas_282015-04-17 19:16 12KCOILS output, window length 28
[ ]jp_z6NwreT.concise2015-04-17 19:16 65KPrediction: coiled-coil, solvent, alignment
[ ]jp_z6NwreT.concise.blc2015-04-17 19:16 31KBLC format prediction and alignment data
[ ]jp_z6NwreT.concise.fasta2015-04-17 19:16 30KPrediction: coiled-coil, solvent, alignment
[ ]jp_z6NwreT.concise.pdf2015-04-17 19:16 218KPDF prediction and alignment data
[ ]jp_z6NwreT.concise.ps2015-04-17 19:16 3.8MPrediction: coiled-coil, solvent, alignment
[ ]jp_z6NwreT.fasta2015-04-17 18:26 302 Input query sequence in FASTA format
[ ]jp_z6NwreT.full_MSA.fasta2015-04-17 19:16 58KFull MSA before JPred filters in FASTA
[TXT]jp_z6NwreT.full_MSA.fasta.noGaps.html2015-04-17 19:16 41KFull MSA before JPred filters in FASTA
[TXT]jp_z6NwreT.full_MSA.fasta.withGaps.html2015-04-17 19:16 274KFull MSA before JPred filters in FASTA
[ ]jp_z6NwreT.hmm2015-04-17 19:16 54KHHMer2 profile of the alignment
[TXT]jp_z6NwreT.html2015-04-17 19:16 75KHTML prediction and alignment data
[ ]jp_z6NwreT.input2015-04-17 17:21 293 Raw input data for analysis
[ ]jp_z6NwreT.jalview2015-04-17 19:16 6.7KJalview annotation file for alignment
[ ]jp_z6NwreT.jnet2015-04-17 19:16 10KJnet secondary structure output
[TXT]jp_z6NwreT.profile2015-04-17 19:01 46KPSIBLAST profile from alignment
[ ]jp_z6NwreT.pssm2015-04-17 19:16 61KPSIBLAST PSSM for Jnet
[TXT]jp_z6NwreT.results.html2016-02-15 12:18 123KJPred results page
[TXT]jp_z6NwreT.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_z6NwreT.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_z6NwreT.seq2015-04-17 17:21 302 Sequence data file
[TXT]jp_z6NwreT.simple.html2015-04-17 19:16 1.8KBrief HTML: sequence and prediction only
[TXT]jp_z6NwreT.svg.html2015-04-17 19:16 115KJalview SVG summary of results
[ ]jp_z6NwreT.tar.gz2015-04-17 19:16 387KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.