JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 20:35 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1tf5a1.name2015-04-17 18:33 0 Job name flag file
[ ]jp_01X0Tj1.align2015-04-17 20:35 105KPSIBLAST alignment in FASTA format
[TXT]jp_01X0Tj1.als2015-04-17 20:35 2.4KAlscript command file for PS/PDF output
[ ]jp_01X0Tj1.blast.gz2015-04-17 20:34 2.3MCompressed PSIBLAST output file
[TXT]jp_01X0Tj1.coils.csv2015-04-17 20:35 762 COILS output in CSV format
[ ]jp_01X0Tj1.coilseq.lupas_142015-04-17 20:35 5.1KCOILS output, window length 14
[ ]jp_01X0Tj1.coilseq.lupas_212015-04-17 20:35 5.1KCOILS output, window length 21
[ ]jp_01X0Tj1.coilseq.lupas_282015-04-17 20:35 5.1KCOILS output, window length 28
[ ]jp_01X0Tj1.concise2015-04-17 20:35 205KPrediction: coiled-coil, solvent, alignment
[ ]jp_01X0Tj1.concise.blc2015-04-17 20:35 105KBLC format prediction and alignment data
[ ]jp_01X0Tj1.concise.fasta2015-04-17 20:35 106KPrediction: coiled-coil, solvent, alignment
[ ]jp_01X0Tj1.concise.pdf2015-04-17 20:35 674KPDF prediction and alignment data
[ ]jp_01X0Tj1.concise.ps2015-04-17 20:35 12MPrediction: coiled-coil, solvent, alignment
[ ]jp_01X0Tj1.fasta2015-04-17 20:28 136 Input query sequence in FASTA format
[ ]jp_01X0Tj1.full_MSA.fasta2015-04-17 20:34 4.6MFull MSA before JPred filters in FASTA
[TXT]jp_01X0Tj1.full_MSA.fasta.noGaps.html2015-04-17 20:35 944KFull MSA before JPred filters in FASTA
[TXT]jp_01X0Tj1.full_MSA.fasta.withGaps.html2015-04-17 20:35 12MFull MSA before JPred filters in FASTA
[ ]jp_01X0Tj1.hmm2015-04-17 20:35 23KHHMer2 profile of the alignment
[TXT]jp_01X0Tj1.html2015-04-17 20:35 262KHTML prediction and alignment data
[ ]jp_01X0Tj1.input2015-04-17 18:33 129 Raw input data for analysis
[ ]jp_01X0Tj1.jalview2015-04-17 20:35 3.3KJalview annotation file for alignment
[ ]jp_01X0Tj1.jnet2015-04-17 20:35 4.5KJnet secondary structure output
[TXT]jp_01X0Tj1.profile2015-04-17 20:34 20KPSIBLAST profile from alignment
[ ]jp_01X0Tj1.pssm2015-04-17 20:35 26KPSIBLAST PSSM for Jnet
[TXT]jp_01X0Tj1.results.html2016-02-15 12:18 58KJPred results page
[TXT]jp_01X0Tj1.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_01X0Tj1.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_01X0Tj1.seq2015-04-17 18:33 136 Sequence data file
[TXT]jp_01X0Tj1.simple.html2015-04-17 20:35 1.3KBrief HTML: sequence and prediction only
[TXT]jp_01X0Tj1.svg.html2015-04-17 20:35 50KJalview SVG summary of results
[ ]jp_01X0Tj1.tar.gz2015-04-17 20:35 4.2MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.