JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:32 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1ts9a_.name2015-04-17 17:22 0 Job name flag file
[ ]jp_iDSFAmO.align2015-04-17 18:32 51KPSIBLAST alignment in FASTA format
[TXT]jp_iDSFAmO.als2015-04-17 18:32 2.5KAlscript command file for PS/PDF output
[ ]jp_iDSFAmO.blast.gz2015-04-17 18:31 254KCompressed PSIBLAST output file
[TXT]jp_iDSFAmO.coils.csv2015-04-17 18:32 618 COILS output in CSV format
[ ]jp_iDSFAmO.coilseq.lupas_142015-04-17 18:32 4.1KCOILS output, window length 14
[ ]jp_iDSFAmO.coilseq.lupas_212015-04-17 18:32 4.1KCOILS output, window length 21
[ ]jp_iDSFAmO.coilseq.lupas_282015-04-17 18:32 4.1KCOILS output, window length 28
[ ]jp_iDSFAmO.concise2015-04-17 18:32 101KPrediction: coiled-coil, solvent, alignment
[ ]jp_iDSFAmO.concise.blc2015-04-17 18:32 52KBLC format prediction and alignment data
[ ]jp_iDSFAmO.concise.fasta2015-04-17 18:32 52KPrediction: coiled-coil, solvent, alignment
[ ]jp_iDSFAmO.concise.pdf2015-04-17 18:32 326KPDF prediction and alignment data
[ ]jp_iDSFAmO.concise.ps2015-04-17 18:32 5.8MPrediction: coiled-coil, solvent, alignment
[ ]jp_iDSFAmO.fasta2015-04-17 18:27 112 Input query sequence in FASTA format
[ ]jp_iDSFAmO.full_MSA.fasta2015-04-17 18:31 506KFull MSA before JPred filters in FASTA
[TXT]jp_iDSFAmO.full_MSA.fasta.noGaps.html2015-04-17 18:32 150KFull MSA before JPred filters in FASTA
[TXT]jp_iDSFAmO.full_MSA.fasta.withGaps.html2015-04-17 18:32 1.1MFull MSA before JPred filters in FASTA
[ ]jp_iDSFAmO.hmm2015-04-17 18:32 18KHHMer2 profile of the alignment
[TXT]jp_iDSFAmO.html2015-04-17 18:32 148KHTML prediction and alignment data
[ ]jp_iDSFAmO.input2015-04-17 17:22 105 Raw input data for analysis
[ ]jp_iDSFAmO.jalview2015-04-17 18:32 2.8KJalview annotation file for alignment
[ ]jp_iDSFAmO.jnet2015-04-17 18:32 3.7KJnet secondary structure output
[TXT]jp_iDSFAmO.profile2015-04-17 18:31 16KPSIBLAST profile from alignment
[ ]jp_iDSFAmO.pssm2015-04-17 18:32 21KPSIBLAST PSSM for Jnet
[TXT]jp_iDSFAmO.results.html2016-02-15 12:18 50KJPred results page
[TXT]jp_iDSFAmO.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_iDSFAmO.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_iDSFAmO.seq2015-04-17 17:22 112 Sequence data file
[TXT]jp_iDSFAmO.simple.html2015-04-17 18:32 1.3KBrief HTML: sequence and prediction only
[TXT]jp_iDSFAmO.svg.html2015-04-17 18:32 42KJalview SVG summary of results
[ ]jp_iDSFAmO.tar.gz2015-04-17 18:32 802KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.