JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:43 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1tx4a_.name2015-04-17 16:44 0 Job name flag file
[ ]jp_NO03LBz.align2015-04-17 17:42 123KPSIBLAST alignment in FASTA format
[TXT]jp_NO03LBz.als2015-04-17 17:42 2.6KAlscript command file for PS/PDF output
[ ]jp_NO03LBz.blast.gz2015-04-17 17:40 17MCompressed PSIBLAST output file
[TXT]jp_NO03LBz.coils.csv2015-04-17 17:42 1.2KCOILS output in CSV format
[ ]jp_NO03LBz.coilseq.lupas_142015-04-17 17:42 8.2KCOILS output, window length 14
[ ]jp_NO03LBz.coilseq.lupas_212015-04-17 17:42 8.2KCOILS output, window length 21
[ ]jp_NO03LBz.coilseq.lupas_282015-04-17 17:42 8.2KCOILS output, window length 28
[ ]jp_NO03LBz.concise2015-04-17 17:42 245KPrediction: coiled-coil, solvent, alignment
[ ]jp_NO03LBz.concise.blc2015-04-17 17:42 124KBLC format prediction and alignment data
[ ]jp_NO03LBz.concise.fasta2015-04-17 17:42 125KPrediction: coiled-coil, solvent, alignment
[ ]jp_NO03LBz.concise.pdf2015-04-17 17:42 953KPDF prediction and alignment data
[ ]jp_NO03LBz.concise.ps2015-04-17 17:42 16MPrediction: coiled-coil, solvent, alignment
[ ]jp_NO03LBz.fasta2015-04-17 17:30 211 Input query sequence in FASTA format
[ ]jp_NO03LBz.full_MSA.fasta2015-04-17 17:41 19MFull MSA before JPred filters in FASTA
[TXT]jp_NO03LBz.full_MSA.fasta.noGaps.html2015-04-17 17:43 2.2MFull MSA before JPred filters in FASTA
[TXT]jp_NO03LBz.full_MSA.fasta.withGaps.html2015-04-17 17:43 48MFull MSA before JPred filters in FASTA
[ ]jp_NO03LBz.hmm2015-04-17 17:42 37KHHMer2 profile of the alignment
[TXT]jp_NO03LBz.html2015-04-17 17:42 251KHTML prediction and alignment data
[ ]jp_NO03LBz.input2015-04-17 16:44 203 Raw input data for analysis
[ ]jp_NO03LBz.jalview2015-04-17 17:42 4.7KJalview annotation file for alignment
[ ]jp_NO03LBz.jnet2015-04-17 17:42 7.2KJnet secondary structure output
[TXT]jp_NO03LBz.profile2015-04-17 17:38 32KPSIBLAST profile from alignment
[ ]jp_NO03LBz.pssm2015-04-17 17:42 42KPSIBLAST PSSM for Jnet
[TXT]jp_NO03LBz.results.html2016-02-15 12:18 88KJPred results page
[TXT]jp_NO03LBz.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_NO03LBz.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_NO03LBz.seq2015-04-17 16:44 211 Sequence data file
[TXT]jp_NO03LBz.simple.html2015-04-17 17:42 1.5KBrief HTML: sequence and prediction only
[TXT]jp_NO03LBz.svg.html2015-04-17 17:43 80KJalview SVG summary of results
[ ]jp_NO03LBz.tar.gz2015-04-17 17:43 23MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.