JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:37 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1u5ka2.name2015-04-17 15:29 0 Job name flag file
[ ]jp_O6dC2EB.align2015-04-17 15:37 204KPSIBLAST alignment in FASTA format
[TXT]jp_O6dC2EB.als2015-04-17 15:37 2.6KAlscript command file for PS/PDF output
[ ]jp_O6dC2EB.blast.gz2015-04-17 15:36 1.4MCompressed PSIBLAST output file
[TXT]jp_O6dC2EB.coils.csv2015-04-17 15:37 972 COILS output in CSV format
[ ]jp_O6dC2EB.coilseq.lupas_142015-04-17 15:37 6.6KCOILS output, window length 14
[ ]jp_O6dC2EB.coilseq.lupas_212015-04-17 15:37 6.6KCOILS output, window length 21
[ ]jp_O6dC2EB.coilseq.lupas_282015-04-17 15:37 6.6KCOILS output, window length 28
[ ]jp_O6dC2EB.concise2015-04-17 15:37 397KPrediction: coiled-coil, solvent, alignment
[ ]jp_O6dC2EB.concise.blc2015-04-17 15:37 203KBLC format prediction and alignment data
[ ]jp_O6dC2EB.concise.fasta2015-04-17 15:37 206KPrediction: coiled-coil, solvent, alignment
[ ]jp_O6dC2EB.concise.pdf2015-04-17 15:37 1.4MPDF prediction and alignment data
[ ]jp_O6dC2EB.concise.ps2015-04-17 15:37 25MPrediction: coiled-coil, solvent, alignment
[ ]jp_O6dC2EB.fasta2015-04-17 15:33 172 Input query sequence in FASTA format
[ ]jp_O6dC2EB.full_MSA.fasta2015-04-17 15:36 3.8MFull MSA before JPred filters in FASTA
[TXT]jp_O6dC2EB.full_MSA.fasta.noGaps.html2015-04-17 15:37 784KFull MSA before JPred filters in FASTA
[TXT]jp_O6dC2EB.full_MSA.fasta.withGaps.html2015-04-17 15:37 13MFull MSA before JPred filters in FASTA
[ ]jp_O6dC2EB.hmm2015-04-17 15:37 29KHHMer2 profile of the alignment
[TXT]jp_O6dC2EB.html2015-04-17 15:37 444KHTML prediction and alignment data
[ ]jp_O6dC2EB.input2015-04-17 15:29 164 Raw input data for analysis
[ ]jp_O6dC2EB.jalview2015-04-17 15:37 4.0KJalview annotation file for alignment
[ ]jp_O6dC2EB.jnet2015-04-17 15:37 5.8KJnet secondary structure output
[TXT]jp_O6dC2EB.profile2015-04-17 15:35 25KPSIBLAST profile from alignment
[ ]jp_O6dC2EB.pssm2015-04-17 15:37 34KPSIBLAST PSSM for Jnet
[TXT]jp_O6dC2EB.results.html2016-02-15 12:18 72KJPred results page
[TXT]jp_O6dC2EB.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_O6dC2EB.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_O6dC2EB.seq2015-04-17 15:29 172 Sequence data file
[TXT]jp_O6dC2EB.simple.html2015-04-17 15:37 1.4KBrief HTML: sequence and prediction only
[TXT]jp_O6dC2EB.svg.html2015-04-17 15:37 64KJalview SVG summary of results
[ ]jp_O6dC2EB.tar.gz2015-04-17 15:37 4.6MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.