JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:48 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1u7ga_.name2015-04-17 19:11 0 Job name flag file
[ ]jp_kGpM8DG.align2015-04-17 21:47 306KPSIBLAST alignment in FASTA format
[TXT]jp_kGpM8DG.als2015-04-17 21:47 2.9KAlscript command file for PS/PDF output
[ ]jp_kGpM8DG.blast.gz2015-04-17 21:43 7.4MCompressed PSIBLAST output file
[TXT]jp_kGpM8DG.coils.csv2015-04-17 21:47 2.3KCOILS output in CSV format
[ ]jp_kGpM8DG.coilseq.lupas_142015-04-17 21:47 16KCOILS output, window length 14
[ ]jp_kGpM8DG.coilseq.lupas_212015-04-17 21:47 16KCOILS output, window length 21
[ ]jp_kGpM8DG.coilseq.lupas_282015-04-17 21:47 16KCOILS output, window length 28
[ ]jp_kGpM8DG.concise2015-04-17 21:47 613KPrediction: coiled-coil, solvent, alignment
[ ]jp_kGpM8DG.concise.blc2015-04-17 21:47 307KBLC format prediction and alignment data
[ ]jp_kGpM8DG.concise.fasta2015-04-17 21:47 310KPrediction: coiled-coil, solvent, alignment
[ ]jp_kGpM8DG.concise.pdf2015-04-17 21:48 2.0MPDF prediction and alignment data
[ ]jp_kGpM8DG.concise.ps2015-04-17 21:47 38MPrediction: coiled-coil, solvent, alignment
[ ]jp_kGpM8DG.fasta2015-04-17 21:35 401 Input query sequence in FASTA format
[ ]jp_kGpM8DG.full_MSA.fasta2015-04-17 21:47 16MFull MSA before JPred filters in FASTA
[TXT]jp_kGpM8DG.full_MSA.fasta.noGaps.html2015-04-17 21:48 1.9MFull MSA before JPred filters in FASTA
[TXT]jp_kGpM8DG.full_MSA.fasta.withGaps.html2015-04-17 21:48 42MFull MSA before JPred filters in FASTA
[ ]jp_kGpM8DG.hmm2015-04-17 21:47 72KHHMer2 profile of the alignment
[TXT]jp_kGpM8DG.html2015-04-17 21:47 495KHTML prediction and alignment data
[ ]jp_kGpM8DG.input2015-04-17 19:11 390 Raw input data for analysis
[ ]jp_kGpM8DG.jalview2015-04-17 21:47 8.6KJalview annotation file for alignment
[ ]jp_kGpM8DG.jnet2015-04-17 21:47 14KJnet secondary structure output
[TXT]jp_kGpM8DG.profile2015-04-17 21:41 61KPSIBLAST profile from alignment
[ ]jp_kGpM8DG.pssm2015-04-17 21:47 82KPSIBLAST PSSM for Jnet
[TXT]jp_kGpM8DG.results.html2016-02-15 12:18 154KJPred results page
[TXT]jp_kGpM8DG.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_kGpM8DG.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_kGpM8DG.seq2015-04-17 19:11 401 Sequence data file
[TXT]jp_kGpM8DG.simple.html2015-04-17 21:47 1.8KBrief HTML: sequence and prediction only
[TXT]jp_kGpM8DG.svg.html2015-04-17 21:48 146KJalview SVG summary of results
[ ]jp_kGpM8DG.tar.gz2015-04-17 21:48 14MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.