JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:38 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1us7b_.name2015-04-17 15:30 0 Job name flag file
[ ]jp_21IcC6U.align2015-04-17 15:38 56KPSIBLAST alignment in FASTA format
[TXT]jp_21IcC6U.als2015-04-17 15:38 2.6KAlscript command file for PS/PDF output
[ ]jp_21IcC6U.blast.gz2015-04-17 15:38 275KCompressed PSIBLAST output file
[TXT]jp_21IcC6U.coils.csv2015-04-17 15:38 1.2KCOILS output in CSV format
[ ]jp_21IcC6U.coilseq.lupas_142015-04-17 15:38 8.1KCOILS output, window length 14
[ ]jp_21IcC6U.coilseq.lupas_212015-04-17 15:38 8.1KCOILS output, window length 21
[ ]jp_21IcC6U.coilseq.lupas_282015-04-17 15:38 8.1KCOILS output, window length 28
[ ]jp_21IcC6U.concise2015-04-17 15:38 116KPrediction: coiled-coil, solvent, alignment
[ ]jp_21IcC6U.concise.blc2015-04-17 15:38 58KBLC format prediction and alignment data
[ ]jp_21IcC6U.concise.fasta2015-04-17 15:38 58KPrediction: coiled-coil, solvent, alignment
[ ]jp_21IcC6U.concise.pdf2015-04-17 15:38 368KPDF prediction and alignment data
[ ]jp_21IcC6U.concise.ps2015-04-17 15:38 6.9MPrediction: coiled-coil, solvent, alignment
[ ]jp_21IcC6U.fasta2015-04-17 15:34 208 Input query sequence in FASTA format
[ ]jp_21IcC6U.full_MSA.fasta2015-04-17 15:38 495KFull MSA before JPred filters in FASTA
[TXT]jp_21IcC6U.full_MSA.fasta.noGaps.html2015-04-17 15:38 145KFull MSA before JPred filters in FASTA
[TXT]jp_21IcC6U.full_MSA.fasta.withGaps.html2015-04-17 15:38 1.7MFull MSA before JPred filters in FASTA
[ ]jp_21IcC6U.hmm2015-04-17 15:38 36KHHMer2 profile of the alignment
[TXT]jp_21IcC6U.html2015-04-17 15:38 128KHTML prediction and alignment data
[ ]jp_21IcC6U.input2015-04-17 15:30 200 Raw input data for analysis
[ ]jp_21IcC6U.jalview2015-04-17 15:38 4.8KJalview annotation file for alignment
[ ]jp_21IcC6U.jnet2015-04-17 15:38 7.1KJnet secondary structure output
[TXT]jp_21IcC6U.profile2015-04-17 15:37 31KPSIBLAST profile from alignment
[ ]jp_21IcC6U.pssm2015-04-17 15:38 41KPSIBLAST PSSM for Jnet
[TXT]jp_21IcC6U.results.html2016-02-15 12:18 85KJPred results page
[TXT]jp_21IcC6U.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_21IcC6U.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_21IcC6U.seq2015-04-17 15:30 208 Sequence data file
[TXT]jp_21IcC6U.simple.html2015-04-17 15:38 1.5KBrief HTML: sequence and prediction only
[TXT]jp_21IcC6U.svg.html2015-04-17 15:38 77KJalview SVG summary of results
[ ]jp_21IcC6U.tar.gz2015-04-17 15:38 891KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.