JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:40 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1ut7a_.name2015-04-17 17:58 0 Job name flag file
[ ]jp_kgAckMN.align2015-04-17 19:40 108KPSIBLAST alignment in FASTA format
[TXT]jp_kgAckMN.als2015-04-17 19:40 2.3KAlscript command file for PS/PDF output
[ ]jp_kgAckMN.blast.gz2015-04-17 19:39 4.6MCompressed PSIBLAST output file
[TXT]jp_kgAckMN.coils.csv2015-04-17 19:40 912 COILS output in CSV format
[ ]jp_kgAckMN.coilseq.lupas_142015-04-17 19:40 6.2KCOILS output, window length 14
[ ]jp_kgAckMN.coilseq.lupas_212015-04-17 19:40 6.2KCOILS output, window length 21
[ ]jp_kgAckMN.coilseq.lupas_282015-04-17 19:40 6.2KCOILS output, window length 28
[ ]jp_kgAckMN.concise2015-04-17 19:40 213KPrediction: coiled-coil, solvent, alignment
[ ]jp_kgAckMN.concise.blc2015-04-17 19:40 109KBLC format prediction and alignment data
[ ]jp_kgAckMN.concise.fasta2015-04-17 19:40 110KPrediction: coiled-coil, solvent, alignment
[ ]jp_kgAckMN.concise.pdf2015-04-17 19:40 674KPDF prediction and alignment data
[ ]jp_kgAckMN.concise.ps2015-04-17 19:40 12MPrediction: coiled-coil, solvent, alignment
[ ]jp_kgAckMN.fasta2015-04-17 19:31 162 Input query sequence in FASTA format
[ ]jp_kgAckMN.full_MSA.fasta2015-04-17 19:39 9.8MFull MSA before JPred filters in FASTA
[TXT]jp_kgAckMN.full_MSA.fasta.noGaps.html2015-04-17 19:40 1.1MFull MSA before JPred filters in FASTA
[TXT]jp_kgAckMN.full_MSA.fasta.withGaps.html2015-04-17 19:40 23MFull MSA before JPred filters in FASTA
[ ]jp_kgAckMN.hmm2015-04-17 19:40 28KHHMer2 profile of the alignment
[TXT]jp_kgAckMN.html2015-04-17 19:40 246KHTML prediction and alignment data
[ ]jp_kgAckMN.input2015-04-17 17:58 154 Raw input data for analysis
[ ]jp_kgAckMN.jalview2015-04-17 19:40 3.7KJalview annotation file for alignment
[ ]jp_kgAckMN.jnet2015-04-17 19:40 5.4KJnet secondary structure output
[TXT]jp_kgAckMN.profile2015-04-17 19:37 24KPSIBLAST profile from alignment
[ ]jp_kgAckMN.pssm2015-04-17 19:40 32KPSIBLAST PSSM for Jnet
[TXT]jp_kgAckMN.results.html2016-02-15 12:18 66KJPred results page
[TXT]jp_kgAckMN.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_kgAckMN.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_kgAckMN.seq2015-04-17 17:58 162 Sequence data file
[TXT]jp_kgAckMN.simple.html2015-04-17 19:40 1.3KBrief HTML: sequence and prediction only
[TXT]jp_kgAckMN.svg.html2015-04-17 19:40 58KJalview SVG summary of results
[ ]jp_kgAckMN.tar.gz2015-04-17 19:40 7.5MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.