JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:36 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1utga_.name2015-04-17 16:08 0 Job name flag file
[ ]jp_BJ5Yp0e.align2015-04-17 16:35 8.5KPSIBLAST alignment in FASTA format
[TXT]jp_BJ5Yp0e.als2015-04-17 16:35 1.7KAlscript command file for PS/PDF output
[ ]jp_BJ5Yp0e.blast.gz2015-04-17 16:35 15KCompressed PSIBLAST output file
[TXT]jp_BJ5Yp0e.coils.csv2015-04-17 16:35 450 COILS output in CSV format
[ ]jp_BJ5Yp0e.coilseq.lupas_142015-04-17 16:35 2.9KCOILS output, window length 14
[ ]jp_BJ5Yp0e.coilseq.lupas_212015-04-17 16:35 2.9KCOILS output, window length 21
[ ]jp_BJ5Yp0e.coilseq.lupas_282015-04-17 16:35 2.9KCOILS output, window length 28
[ ]jp_BJ5Yp0e.concise2015-04-17 16:35 19KPrediction: coiled-coil, solvent, alignment
[ ]jp_BJ5Yp0e.concise.blc2015-04-17 16:35 9.5KBLC format prediction and alignment data
[ ]jp_BJ5Yp0e.concise.fasta2015-04-17 16:35 9.3KPrediction: coiled-coil, solvent, alignment
[ ]jp_BJ5Yp0e.concise.pdf2015-04-17 16:35 59KPDF prediction and alignment data
[ ]jp_BJ5Yp0e.concise.ps2015-04-17 16:35 1.0MPrediction: coiled-coil, solvent, alignment
[ ]jp_BJ5Yp0e.fasta2015-04-17 16:33 83 Input query sequence in FASTA format
[ ]jp_BJ5Yp0e.full_MSA.fasta2015-04-17 16:35 17KFull MSA before JPred filters in FASTA
[TXT]jp_BJ5Yp0e.full_MSA.fasta.noGaps.html2015-04-17 16:35 35KFull MSA before JPred filters in FASTA
[TXT]jp_BJ5Yp0e.full_MSA.fasta.withGaps.html2015-04-17 16:35 79KFull MSA before JPred filters in FASTA
[ ]jp_BJ5Yp0e.hmm2015-04-17 16:35 13KHHMer2 profile of the alignment
[TXT]jp_BJ5Yp0e.html2015-04-17 16:35 35KHTML prediction and alignment data
[ ]jp_BJ5Yp0e.input2015-04-17 16:08 77 Raw input data for analysis
[ ]jp_BJ5Yp0e.jalview2015-04-17 16:35 2.2KJalview annotation file for alignment
[ ]jp_BJ5Yp0e.jnet2015-04-17 16:35 2.6KJnet secondary structure output
[TXT]jp_BJ5Yp0e.profile2015-04-17 16:34 12KPSIBLAST profile from alignment
[ ]jp_BJ5Yp0e.pssm2015-04-17 16:35 15KPSIBLAST PSSM for Jnet
[TXT]jp_BJ5Yp0e.results.html2016-02-15 12:18 39KJPred results page
[TXT]jp_BJ5Yp0e.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_BJ5Yp0e.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_BJ5Yp0e.seq2015-04-17 16:08 83 Sequence data file
[TXT]jp_BJ5Yp0e.simple.html2015-04-17 16:35 1.1KBrief HTML: sequence and prediction only
[TXT]jp_BJ5Yp0e.svg.html2015-04-17 16:35 31KJalview SVG summary of results
[ ]jp_BJ5Yp0e.tar.gz2015-04-17 16:36 120KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.