JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:41 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1ux5a_.name2015-04-17 17:58 0 Job name flag file
[ ]jp_oRLjayx.align2015-04-17 19:40 280KPSIBLAST alignment in FASTA format
[TXT]jp_oRLjayx.als2015-04-17 19:40 4.2KAlscript command file for PS/PDF output
[ ]jp_oRLjayx.blast.gz2015-04-17 19:37 9.8MCompressed PSIBLAST output file
[TXT]jp_oRLjayx.coils.csv2015-04-17 19:40 2.4KCOILS output in CSV format
[ ]jp_oRLjayx.coilseq.lupas_142015-04-17 19:40 17KCOILS output, window length 14
[ ]jp_oRLjayx.coilseq.lupas_212015-04-17 19:40 17KCOILS output, window length 21
[ ]jp_oRLjayx.coilseq.lupas_282015-04-17 19:40 17KCOILS output, window length 28
[ ]jp_oRLjayx.concise2015-04-17 19:40 564KPrediction: coiled-coil, solvent, alignment
[ ]jp_oRLjayx.concise.blc2015-04-17 19:40 283KBLC format prediction and alignment data
[ ]jp_oRLjayx.concise.fasta2015-04-17 19:40 284KPrediction: coiled-coil, solvent, alignment
[ ]jp_oRLjayx.concise.pdf2015-04-17 19:41 1.9MPDF prediction and alignment data
[ ]jp_oRLjayx.concise.ps2015-04-17 19:40 36MPrediction: coiled-coil, solvent, alignment
[ ]jp_oRLjayx.fasta2015-04-17 19:32 429 Input query sequence in FASTA format
[ ]jp_oRLjayx.full_MSA.fasta2015-04-17 19:39 19MFull MSA before JPred filters in FASTA
[TXT]jp_oRLjayx.full_MSA.fasta.noGaps.html2015-04-17 19:41 1.9MFull MSA before JPred filters in FASTA
[TXT]jp_oRLjayx.full_MSA.fasta.withGaps.html2015-04-17 19:41 48MFull MSA before JPred filters in FASTA
[ ]jp_oRLjayx.hmm2015-04-17 19:40 77KHHMer2 profile of the alignment
[TXT]jp_oRLjayx.html2015-04-17 19:40 442KHTML prediction and alignment data
[ ]jp_oRLjayx.input2015-04-17 17:58 418 Raw input data for analysis
[ ]jp_oRLjayx.jalview2015-04-17 19:40 9.1KJalview annotation file for alignment
[ ]jp_oRLjayx.jnet2015-04-17 19:40 15KJnet secondary structure output
[TXT]jp_oRLjayx.profile2015-04-17 19:36 66KPSIBLAST profile from alignment
[ ]jp_oRLjayx.pssm2015-04-17 19:40 88KPSIBLAST PSSM for Jnet
[TXT]jp_oRLjayx.results.html2016-02-15 12:18 170KJPred results page
[TXT]jp_oRLjayx.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_oRLjayx.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_oRLjayx.seq2015-04-17 17:58 429 Sequence data file
[TXT]jp_oRLjayx.simple.html2015-04-17 19:40 2.1KBrief HTML: sequence and prediction only
[TXT]jp_oRLjayx.svg.html2015-04-17 19:41 162KJalview SVG summary of results
[ ]jp_oRLjayx.tar.gz2015-04-17 19:41 17MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.