JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:43 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1uxya2.name2015-04-17 19:12 0 Job name flag file
[ ]jp_rp9tu83.align2015-04-17 21:43 163KPSIBLAST alignment in FASTA format
[TXT]jp_rp9tu83.als2015-04-17 21:43 2.6KAlscript command file for PS/PDF output
[ ]jp_rp9tu83.blast.gz2015-04-17 21:42 2.5MCompressed PSIBLAST output file
[TXT]jp_rp9tu83.coils.csv2015-04-17 21:43 882 COILS output in CSV format
[ ]jp_rp9tu83.coilseq.lupas_142015-04-17 21:43 6.0KCOILS output, window length 14
[ ]jp_rp9tu83.coilseq.lupas_212015-04-17 21:43 6.0KCOILS output, window length 21
[ ]jp_rp9tu83.coilseq.lupas_282015-04-17 21:43 6.0KCOILS output, window length 28
[ ]jp_rp9tu83.concise2015-04-17 21:43 318KPrediction: coiled-coil, solvent, alignment
[ ]jp_rp9tu83.concise.blc2015-04-17 21:43 163KBLC format prediction and alignment data
[ ]jp_rp9tu83.concise.fasta2015-04-17 21:43 164KPrediction: coiled-coil, solvent, alignment
[ ]jp_rp9tu83.concise.pdf2015-04-17 21:43 1.0MPDF prediction and alignment data
[ ]jp_rp9tu83.concise.ps2015-04-17 21:43 19MPrediction: coiled-coil, solvent, alignment
[ ]jp_rp9tu83.fasta2015-04-17 21:36 156 Input query sequence in FASTA format
[ ]jp_rp9tu83.full_MSA.fasta2015-04-17 21:42 4.5MFull MSA before JPred filters in FASTA
[TXT]jp_rp9tu83.full_MSA.fasta.noGaps.html2015-04-17 21:43 1.0MFull MSA before JPred filters in FASTA
[TXT]jp_rp9tu83.full_MSA.fasta.withGaps.html2015-04-17 21:43 14MFull MSA before JPred filters in FASTA
[ ]jp_rp9tu83.hmm2015-04-17 21:43 27KHHMer2 profile of the alignment
[TXT]jp_rp9tu83.html2015-04-17 21:43 373KHTML prediction and alignment data
[ ]jp_rp9tu83.input2015-04-17 19:12 149 Raw input data for analysis
[ ]jp_rp9tu83.jalview2015-04-17 21:43 3.7KJalview annotation file for alignment
[ ]jp_rp9tu83.jnet2015-04-17 21:43 5.2KJnet secondary structure output
[TXT]jp_rp9tu83.profile2015-04-17 21:40 23KPSIBLAST profile from alignment
[ ]jp_rp9tu83.pssm2015-04-17 21:43 31KPSIBLAST PSSM for Jnet
[TXT]jp_rp9tu83.results.html2016-02-15 12:18 66KJPred results page
[TXT]jp_rp9tu83.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_rp9tu83.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_rp9tu83.seq2015-04-17 19:12 156 Sequence data file
[TXT]jp_rp9tu83.simple.html2015-04-17 21:43 1.3KBrief HTML: sequence and prediction only
[TXT]jp_rp9tu83.svg.html2015-04-17 21:43 58KJalview SVG summary of results
[ ]jp_rp9tu83.tar.gz2015-04-17 21:43 4.9MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.