JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 22:37 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1vi6a_.name2015-04-17 19:13 0 Job name flag file
[ ]jp_9mhBuzF.align2015-04-17 22:36 152KPSIBLAST alignment in FASTA format
[TXT]jp_9mhBuzF.als2015-04-17 22:36 3.1KAlscript command file for PS/PDF output
[ ]jp_9mhBuzF.blast.gz2015-04-17 22:34 3.5MCompressed PSIBLAST output file
[TXT]jp_9mhBuzF.coils.csv2015-04-17 22:36 1.2KCOILS output in CSV format
[ ]jp_9mhBuzF.coilseq.lupas_142015-04-17 22:36 8.1KCOILS output, window length 14
[ ]jp_9mhBuzF.coilseq.lupas_212015-04-17 22:36 8.1KCOILS output, window length 21
[ ]jp_9mhBuzF.coilseq.lupas_282015-04-17 22:36 8.1KCOILS output, window length 28
[ ]jp_9mhBuzF.concise2015-04-17 22:36 301KPrediction: coiled-coil, solvent, alignment
[ ]jp_9mhBuzF.concise.blc2015-04-17 22:36 153KBLC format prediction and alignment data
[ ]jp_9mhBuzF.concise.fasta2015-04-17 22:36 154KPrediction: coiled-coil, solvent, alignment
[ ]jp_9mhBuzF.concise.pdf2015-04-17 22:36 1.0MPDF prediction and alignment data
[ ]jp_9mhBuzF.concise.ps2015-04-17 22:36 18MPrediction: coiled-coil, solvent, alignment
[ ]jp_9mhBuzF.fasta2015-04-17 21:37 208 Input query sequence in FASTA format
[ ]jp_9mhBuzF.full_MSA.fasta2015-04-17 22:35 7.3MFull MSA before JPred filters in FASTA
[TXT]jp_9mhBuzF.full_MSA.fasta.noGaps.html2015-04-17 22:37 1.2MFull MSA before JPred filters in FASTA
[TXT]jp_9mhBuzF.full_MSA.fasta.withGaps.html2015-04-17 22:37 21MFull MSA before JPred filters in FASTA
[ ]jp_9mhBuzF.hmm2015-04-17 22:36 36KHHMer2 profile of the alignment
[TXT]jp_9mhBuzF.html2015-04-17 22:36 310KHTML prediction and alignment data
[ ]jp_9mhBuzF.input2015-04-17 19:13 200 Raw input data for analysis
[ ]jp_9mhBuzF.jalview2015-04-17 22:36 4.7KJalview annotation file for alignment
[ ]jp_9mhBuzF.jnet2015-04-17 22:36 7.1KJnet secondary structure output
[TXT]jp_9mhBuzF.profile2015-04-17 22:06 31KPSIBLAST profile from alignment
[ ]jp_9mhBuzF.pssm2015-04-17 22:36 41KPSIBLAST PSSM for Jnet
[TXT]jp_9mhBuzF.results.html2016-02-15 12:18 87KJPred results page
[TXT]jp_9mhBuzF.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_9mhBuzF.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_9mhBuzF.seq2015-04-17 19:13 208 Sequence data file
[TXT]jp_9mhBuzF.simple.html2015-04-17 22:36 1.6KBrief HTML: sequence and prediction only
[TXT]jp_9mhBuzF.svg.html2015-04-17 22:37 79KJalview SVG summary of results
[ ]jp_9mhBuzF.tar.gz2015-04-17 22:37 6.6MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.