JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:57 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1vioa2.name2015-04-17 15:31 0 Job name flag file
[ ]jp_u_9MXra.align2015-04-17 15:56 231KPSIBLAST alignment in FASTA format
[TXT]jp_u_9MXra.als2015-04-17 15:56 4.0KAlscript command file for PS/PDF output
[ ]jp_u_9MXra.blast.gz2015-04-17 15:53 18MCompressed PSIBLAST output file
[TXT]jp_u_9MXra.coils.csv2015-04-17 15:56 1.4KCOILS output in CSV format
[ ]jp_u_9MXra.coilseq.lupas_142015-04-17 15:56 9.7KCOILS output, window length 14
[ ]jp_u_9MXra.coilseq.lupas_212015-04-17 15:56 9.7KCOILS output, window length 21
[ ]jp_u_9MXra.coilseq.lupas_282015-04-17 15:56 9.7KCOILS output, window length 28
[ ]jp_u_9MXra.concise2015-04-17 15:56 455KPrediction: coiled-coil, solvent, alignment
[ ]jp_u_9MXra.concise.blc2015-04-17 15:56 230KBLC format prediction and alignment data
[ ]jp_u_9MXra.concise.fasta2015-04-17 15:56 233KPrediction: coiled-coil, solvent, alignment
[ ]jp_u_9MXra.concise.pdf2015-04-17 15:56 1.6MPDF prediction and alignment data
[ ]jp_u_9MXra.concise.ps2015-04-17 15:56 29MPrediction: coiled-coil, solvent, alignment
[ ]jp_u_9MXra.fasta2015-04-17 15:37 246 Input query sequence in FASTA format
[ ]jp_u_9MXra.full_MSA.fasta2015-04-17 15:55 42MFull MSA before JPred filters in FASTA
[TXT]jp_u_9MXra.full_MSA.fasta.noGaps.html2015-04-17 15:57 3.5MFull MSA before JPred filters in FASTA
[TXT]jp_u_9MXra.full_MSA.fasta.withGaps.html2015-04-17 15:57 91MFull MSA before JPred filters in FASTA
[ ]jp_u_9MXra.hmm2015-04-17 15:56 43KHHMer2 profile of the alignment
[TXT]jp_u_9MXra.html2015-04-17 15:56 426KHTML prediction and alignment data
[ ]jp_u_9MXra.input2015-04-17 15:31 237 Raw input data for analysis
[ ]jp_u_9MXra.jalview2015-04-17 15:56 5.4KJalview annotation file for alignment
[ ]jp_u_9MXra.jnet2015-04-17 15:56 8.4KJnet secondary structure output
[TXT]jp_u_9MXra.profile2015-04-17 15:51 37KPSIBLAST profile from alignment
[ ]jp_u_9MXra.pssm2015-04-17 15:56 49KPSIBLAST PSSM for Jnet
[TXT]jp_u_9MXra.results.html2016-02-15 12:18 104KJPred results page
[TXT]jp_u_9MXra.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_u_9MXra.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_u_9MXra.seq2015-04-17 15:31 246 Sequence data file
[TXT]jp_u_9MXra.simple.html2015-04-17 15:56 1.8KBrief HTML: sequence and prediction only
[TXT]jp_u_9MXra.svg.html2015-04-17 15:57 95KJalview SVG summary of results
[ ]jp_u_9MXra.tar.gz2015-04-17 15:57 29MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.