JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 20:39 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1vkea_.name2015-04-17 18:36 0 Job name flag file
[ ]jp_YCTB_Nb.align2015-04-17 20:39 115KPSIBLAST alignment in FASTA format
[TXT]jp_YCTB_Nb.als2015-04-17 20:39 2.1KAlscript command file for PS/PDF output
[ ]jp_YCTB_Nb.blast.gz2015-04-17 20:38 1.4MCompressed PSIBLAST output file
[TXT]jp_YCTB_Nb.coils.csv2015-04-17 20:39 732 COILS output in CSV format
[ ]jp_YCTB_Nb.coilseq.lupas_142015-04-17 20:39 4.9KCOILS output, window length 14
[ ]jp_YCTB_Nb.coilseq.lupas_212015-04-17 20:39 4.9KCOILS output, window length 21
[ ]jp_YCTB_Nb.coilseq.lupas_282015-04-17 20:39 4.9KCOILS output, window length 28
[ ]jp_YCTB_Nb.concise2015-04-17 20:39 223KPrediction: coiled-coil, solvent, alignment
[ ]jp_YCTB_Nb.concise.blc2015-04-17 20:39 115KBLC format prediction and alignment data
[ ]jp_YCTB_Nb.concise.fasta2015-04-17 20:39 116KPrediction: coiled-coil, solvent, alignment
[ ]jp_YCTB_Nb.concise.pdf2015-04-17 20:39 703KPDF prediction and alignment data
[ ]jp_YCTB_Nb.concise.ps2015-04-17 20:39 13MPrediction: coiled-coil, solvent, alignment
[ ]jp_YCTB_Nb.fasta2015-04-17 20:33 131 Input query sequence in FASTA format
[ ]jp_YCTB_Nb.full_MSA.fasta2015-04-17 20:38 4.0MFull MSA before JPred filters in FASTA
[TXT]jp_YCTB_Nb.full_MSA.fasta.noGaps.html2015-04-17 20:39 1.2MFull MSA before JPred filters in FASTA
[TXT]jp_YCTB_Nb.full_MSA.fasta.withGaps.html2015-04-17 20:39 17MFull MSA before JPred filters in FASTA
[ ]jp_YCTB_Nb.hmm2015-04-17 20:39 22KHHMer2 profile of the alignment
[TXT]jp_YCTB_Nb.html2015-04-17 20:39 293KHTML prediction and alignment data
[ ]jp_YCTB_Nb.input2015-04-17 18:36 124 Raw input data for analysis
[ ]jp_YCTB_Nb.jalview2015-04-17 20:39 3.2KJalview annotation file for alignment
[ ]jp_YCTB_Nb.jnet2015-04-17 20:39 4.3KJnet secondary structure output
[TXT]jp_YCTB_Nb.profile2015-04-17 20:36 19KPSIBLAST profile from alignment
[ ]jp_YCTB_Nb.pssm2015-04-17 20:39 25KPSIBLAST PSSM for Jnet
[TXT]jp_YCTB_Nb.results.html2016-02-15 12:18 56KJPred results page
[TXT]jp_YCTB_Nb.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_YCTB_Nb.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_YCTB_Nb.seq2015-04-17 18:36 131 Sequence data file
[TXT]jp_YCTB_Nb.simple.html2015-04-17 20:39 1.2KBrief HTML: sequence and prediction only
[TXT]jp_YCTB_Nb.svg.html2015-04-17 20:39 48KJalview SVG summary of results
[ ]jp_YCTB_Nb.tar.gz2015-04-17 20:40 3.9MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.