A Protein Secondary Structure Prediction Server
| Name | Last modified | Size | Description | |
|---|---|---|---|---|
![[TXT]](/icons/text.gif){kind=icon} | LOG | 2015-04-17 20:38 | 4.7K | JPred server log file |
| README | 2016-02-15 12:18 | 2.1K | Results file descriptions |
| d1vlra2.name | 2015-04-17 18:36 | 0 | Job name flag file |
![[ ]](/icons/unknown.gif){kind=icon} | jp_2dA_XYC.align | 2015-04-17 20:38 | 32K | PSIBLAST alignment in FASTA format |
| jp_2dA_XYC.als | 2015-04-17 20:38 | 2.4K | Alscript command file for PS/PDF output |
![[ ]](/icons/compressed.gif){kind=icon} | jp_2dA_XYC.blast.gz | 2015-04-17 20:38 | 193K | Compressed PSIBLAST output file |
| jp_2dA_XYC.coils.csv | 2015-04-17 20:38 | 636 | COILS output in CSV format |
| jp_2dA_XYC.coilseq.lupas_14 | 2015-04-17 20:38 | 4.2K | COILS output, window length 14 |
| jp_2dA_XYC.coilseq.lupas_21 | 2015-04-17 20:38 | 4.2K | COILS output, window length 21 |
| jp_2dA_XYC.coilseq.lupas_28 | 2015-04-17 20:38 | 4.2K | COILS output, window length 28 |
| jp_2dA_XYC.concise | 2015-04-17 20:38 | 65K | Prediction: coiled-coil, solvent, alignment |
| jp_2dA_XYC.concise.blc | 2015-04-17 20:38 | 33K | BLC format prediction and alignment data |
| jp_2dA_XYC.concise.fasta | 2015-04-17 20:38 | 33K | Prediction: coiled-coil, solvent, alignment |
![[ ]](/icons/layout.gif){kind=icon} | jp_2dA_XYC.concise.pdf | 2015-04-17 20:38 | 214K | PDF prediction and alignment data |
| jp_2dA_XYC.concise.ps | 2015-04-17 20:38 | 3.7M | Prediction: coiled-coil, solvent, alignment |
| jp_2dA_XYC.fasta | 2015-04-17 20:33 | 115 | Input query sequence in FASTA format |
| jp_2dA_XYC.full_MSA.fasta | 2015-04-17 20:38 | 328K | Full MSA before JPred filters in FASTA |
| jp_2dA_XYC.full_MSA.fasta.noGaps.html | 2015-04-17 20:38 | 86K | Full MSA before JPred filters in FASTA |
| jp_2dA_XYC.full_MSA.fasta.withGaps.html | 2015-04-17 20:38 | 859K | Full MSA before JPred filters in FASTA |
| jp_2dA_XYC.hmm | 2015-04-17 20:38 | 19K | HHMer2 profile of the alignment |
| jp_2dA_XYC.html | 2015-04-17 20:38 | 94K | HTML prediction and alignment data |
| jp_2dA_XYC.input | 2015-04-17 18:36 | 108 | Raw input data for analysis |
| jp_2dA_XYC.jalview | 2015-04-17 20:38 | 2.8K | Jalview annotation file for alignment |
| jp_2dA_XYC.jnet | 2015-04-17 20:38 | 3.8K | Jnet secondary structure output |
| jp_2dA_XYC.profile | 2015-04-17 20:37 | 16K | PSIBLAST profile from alignment |
| jp_2dA_XYC.pssm | 2015-04-17 20:38 | 22K | PSIBLAST PSSM for Jnet |
| jp_2dA_XYC.results.html | 2016-02-15 12:18 | 51K | JPred results page |
| jp_2dA_XYC.results_jalview.html | 2016-02-24 17:17 | 13K | Jalview results options |
| jp_2dA_XYC.results_jalview_app.html | 2016-02-24 17:17 | 16K | HTML prediction and alignment data |
| jp_2dA_XYC.seq | 2015-04-17 18:36 | 115 | Sequence data file |
| jp_2dA_XYC.simple.html | 2015-04-17 20:38 | 1.3K | Brief HTML: sequence and prediction only |
![[TXT]](jp_2dA_XYC.svg.html) | jp_2dA_XYC.svg.html | 2015-04-17 20:38 | 43K | Jalview SVG summary of results |
| jp_2dA_XYC.tar.gz | 2015-04-17 20:38 | 570K | Archive containing complete results |
