JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:46 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1vmba_.name2015-04-17 19:13 0 Job name flag file
[ ]jp_LUF2A_u.align2015-04-17 21:46 85KPSIBLAST alignment in FASTA format
[TXT]jp_LUF2A_u.als2015-04-17 21:46 2.3KAlscript command file for PS/PDF output
[ ]jp_LUF2A_u.blast.gz2015-04-17 21:45 899KCompressed PSIBLAST output file
[TXT]jp_LUF2A_u.coils.csv2015-04-17 21:46 672 COILS output in CSV format
[ ]jp_LUF2A_u.coilseq.lupas_142015-04-17 21:46 4.5KCOILS output, window length 14
[ ]jp_LUF2A_u.coilseq.lupas_212015-04-17 21:46 4.5KCOILS output, window length 21
[ ]jp_LUF2A_u.coilseq.lupas_282015-04-17 21:46 4.5KCOILS output, window length 28
[ ]jp_LUF2A_u.concise2015-04-17 21:46 166KPrediction: coiled-coil, solvent, alignment
[ ]jp_LUF2A_u.concise.blc2015-04-17 21:46 85KBLC format prediction and alignment data
[ ]jp_LUF2A_u.concise.fasta2015-04-17 21:46 86KPrediction: coiled-coil, solvent, alignment
[ ]jp_LUF2A_u.concise.pdf2015-04-17 21:46 541KPDF prediction and alignment data
[ ]jp_LUF2A_u.concise.ps2015-04-17 21:46 9.7MPrediction: coiled-coil, solvent, alignment
[ ]jp_LUF2A_u.fasta2015-04-17 21:38 121 Input query sequence in FASTA format
[ ]jp_LUF2A_u.full_MSA.fasta2015-04-17 21:45 1.4MFull MSA before JPred filters in FASTA
[TXT]jp_LUF2A_u.full_MSA.fasta.noGaps.html2015-04-17 21:46 729KFull MSA before JPred filters in FASTA
[TXT]jp_LUF2A_u.full_MSA.fasta.withGaps.html2015-04-17 21:46 7.5MFull MSA before JPred filters in FASTA
[ ]jp_LUF2A_u.hmm2015-04-17 21:46 20KHHMer2 profile of the alignment
[TXT]jp_LUF2A_u.html2015-04-17 21:46 227KHTML prediction and alignment data
[ ]jp_LUF2A_u.input2015-04-17 19:13 114 Raw input data for analysis
[ ]jp_LUF2A_u.jalview2015-04-17 21:46 3.0KJalview annotation file for alignment
[ ]jp_LUF2A_u.jnet2015-04-17 21:46 4.0KJnet secondary structure output
[TXT]jp_LUF2A_u.profile2015-04-17 21:44 17KPSIBLAST profile from alignment
[ ]jp_LUF2A_u.pssm2015-04-17 21:46 23KPSIBLAST PSSM for Jnet
[TXT]jp_LUF2A_u.results.html2016-02-15 12:18 53KJPred results page
[TXT]jp_LUF2A_u.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_LUF2A_u.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_LUF2A_u.seq2015-04-17 19:13 121 Sequence data file
[TXT]jp_LUF2A_u.simple.html2015-04-17 21:46 1.2KBrief HTML: sequence and prediction only
[TXT]jp_LUF2A_u.svg.html2015-04-17 21:46 45KJalview SVG summary of results
[ ]jp_LUF2A_u.tar.gz2015-04-17 21:46 2.3MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.