JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:38 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1vmha_.name2015-04-17 17:59 0 Job name flag file
[ ]jp_Q4adxDD.align2015-04-17 19:38 137KPSIBLAST alignment in FASTA format
[TXT]jp_Q4adxDD.als2015-04-17 19:38 2.9KAlscript command file for PS/PDF output
[ ]jp_Q4adxDD.blast.gz2015-04-17 19:37 1.4MCompressed PSIBLAST output file
[TXT]jp_Q4adxDD.coils.csv2015-04-17 19:38 798 COILS output in CSV format
[ ]jp_Q4adxDD.coilseq.lupas_142015-04-17 19:38 5.4KCOILS output, window length 14
[ ]jp_Q4adxDD.coilseq.lupas_212015-04-17 19:38 5.4KCOILS output, window length 21
[ ]jp_Q4adxDD.coilseq.lupas_282015-04-17 19:38 5.4KCOILS output, window length 28
[ ]jp_Q4adxDD.concise2015-04-17 19:38 267KPrediction: coiled-coil, solvent, alignment
[ ]jp_Q4adxDD.concise.blc2015-04-17 19:38 137KBLC format prediction and alignment data
[ ]jp_Q4adxDD.concise.fasta2015-04-17 19:38 138KPrediction: coiled-coil, solvent, alignment
[ ]jp_Q4adxDD.concise.pdf2015-04-17 19:38 954KPDF prediction and alignment data
[ ]jp_Q4adxDD.concise.ps2015-04-17 19:38 16MPrediction: coiled-coil, solvent, alignment
[ ]jp_Q4adxDD.fasta2015-04-17 19:33 142 Input query sequence in FASTA format
[ ]jp_Q4adxDD.full_MSA.fasta2015-04-17 19:37 2.5MFull MSA before JPred filters in FASTA
[TXT]jp_Q4adxDD.full_MSA.fasta.noGaps.html2015-04-17 19:38 683KFull MSA before JPred filters in FASTA
[TXT]jp_Q4adxDD.full_MSA.fasta.withGaps.html2015-04-17 19:38 8.5MFull MSA before JPred filters in FASTA
[ ]jp_Q4adxDD.hmm2015-04-17 19:38 24KHHMer2 profile of the alignment
[TXT]jp_Q4adxDD.html2015-04-17 19:38 332KHTML prediction and alignment data
[ ]jp_Q4adxDD.input2015-04-17 17:59 135 Raw input data for analysis
[ ]jp_Q4adxDD.jalview2015-04-17 19:38 3.4KJalview annotation file for alignment
[ ]jp_Q4adxDD.jnet2015-04-17 19:38 4.7KJnet secondary structure output
[TXT]jp_Q4adxDD.profile2015-04-17 19:36 21KPSIBLAST profile from alignment
[ ]jp_Q4adxDD.pssm2015-04-17 19:38 28KPSIBLAST PSSM for Jnet
[TXT]jp_Q4adxDD.results.html2016-02-15 12:18 62KJPred results page
[TXT]jp_Q4adxDD.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_Q4adxDD.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_Q4adxDD.seq2015-04-17 17:59 142 Sequence data file
[TXT]jp_Q4adxDD.simple.html2015-04-17 19:38 1.4KBrief HTML: sequence and prediction only
[TXT]jp_Q4adxDD.svg.html2015-04-17 19:38 54KJalview SVG summary of results
[ ]jp_Q4adxDD.tar.gz2015-04-17 19:38 3.4MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.