JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:40 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1vp7a_.name2015-04-17 15:32 0 Job name flag file
[ ]jp_k9NczRD.align2015-04-17 15:39 76KPSIBLAST alignment in FASTA format
[TXT]jp_k9NczRD.als2015-04-17 15:40 1.4KAlscript command file for PS/PDF output
[ ]jp_k9NczRD.blast.gz2015-04-17 15:39 365KCompressed PSIBLAST output file
[TXT]jp_k9NczRD.coils.csv2015-04-17 15:40 438 COILS output in CSV format
[ ]jp_k9NczRD.coilseq.lupas_142015-04-17 15:40 2.9KCOILS output, window length 14
[ ]jp_k9NczRD.coilseq.lupas_212015-04-17 15:40 2.9KCOILS output, window length 21
[ ]jp_k9NczRD.coilseq.lupas_282015-04-17 15:40 2.9KCOILS output, window length 28
[ ]jp_k9NczRD.concise2015-04-17 15:40 146KPrediction: coiled-coil, solvent, alignment
[ ]jp_k9NczRD.concise.blc2015-04-17 15:40 77KBLC format prediction and alignment data
[ ]jp_k9NczRD.concise.fasta2015-04-17 15:40 77KPrediction: coiled-coil, solvent, alignment
[ ]jp_k9NczRD.concise.pdf2015-04-17 15:40 427KPDF prediction and alignment data
[ ]jp_k9NczRD.concise.ps2015-04-17 15:40 8.0MPrediction: coiled-coil, solvent, alignment
[ ]jp_k9NczRD.fasta2015-04-17 15:37 81 Input query sequence in FASTA format
[ ]jp_k9NczRD.full_MSA.fasta2015-04-17 15:39 372KFull MSA before JPred filters in FASTA
[TXT]jp_k9NczRD.full_MSA.fasta.noGaps.html2015-04-17 15:40 502KFull MSA before JPred filters in FASTA
[TXT]jp_k9NczRD.full_MSA.fasta.withGaps.html2015-04-17 15:40 1.7MFull MSA before JPred filters in FASTA
[ ]jp_k9NczRD.hmm2015-04-17 15:39 13KHHMer2 profile of the alignment
[TXT]jp_k9NczRD.html2015-04-17 15:40 258KHTML prediction and alignment data
[ ]jp_k9NczRD.input2015-04-17 15:32 75 Raw input data for analysis
[ ]jp_k9NczRD.jalview2015-04-17 15:40 2.2KJalview annotation file for alignment
[ ]jp_k9NczRD.jnet2015-04-17 15:40 2.6KJnet secondary structure output
[TXT]jp_k9NczRD.profile2015-04-17 15:38 11KPSIBLAST profile from alignment
[ ]jp_k9NczRD.pssm2015-04-17 15:39 15KPSIBLAST PSSM for Jnet
[TXT]jp_k9NczRD.results.html2016-02-15 12:18 36KJPred results page
[TXT]jp_k9NczRD.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_k9NczRD.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_k9NczRD.seq2015-04-17 15:32 81 Sequence data file
[TXT]jp_k9NczRD.simple.html2015-04-17 15:40 1.0KBrief HTML: sequence and prediction only
[TXT]jp_k9NczRD.svg.html2015-04-17 15:40 28KJalview SVG summary of results
[ ]jp_k9NczRD.tar.gz2015-04-17 15:40 1.2MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.