JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:40 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1vq8y1.name2015-04-17 16:10 0 Job name flag file
[ ]jp_tRWQ16J.align2015-04-17 16:39 68KPSIBLAST alignment in FASTA format
[TXT]jp_tRWQ16J.als2015-04-17 16:39 2.4KAlscript command file for PS/PDF output
[ ]jp_tRWQ16J.blast.gz2015-04-17 16:39 267KCompressed PSIBLAST output file
[TXT]jp_tRWQ16J.coils.csv2015-04-17 16:39 882 COILS output in CSV format
[ ]jp_tRWQ16J.coilseq.lupas_142015-04-17 16:39 6.0KCOILS output, window length 14
[ ]jp_tRWQ16J.coilseq.lupas_212015-04-17 16:39 6.0KCOILS output, window length 21
[ ]jp_tRWQ16J.coilseq.lupas_282015-04-17 16:39 6.0KCOILS output, window length 28
[ ]jp_tRWQ16J.concise2015-04-17 16:39 136KPrediction: coiled-coil, solvent, alignment
[ ]jp_tRWQ16J.concise.blc2015-04-17 16:39 69KBLC format prediction and alignment data
[ ]jp_tRWQ16J.concise.fasta2015-04-17 16:39 69KPrediction: coiled-coil, solvent, alignment
[ ]jp_tRWQ16J.concise.pdf2015-04-17 16:40 410KPDF prediction and alignment data
[ ]jp_tRWQ16J.concise.ps2015-04-17 16:39 7.8MPrediction: coiled-coil, solvent, alignment
[ ]jp_tRWQ16J.fasta2015-04-17 16:35 156 Input query sequence in FASTA format
[ ]jp_tRWQ16J.full_MSA.fasta2015-04-17 16:39 394KFull MSA before JPred filters in FASTA
[TXT]jp_tRWQ16J.full_MSA.fasta.noGaps.html2015-04-17 16:40 210KFull MSA before JPred filters in FASTA
[TXT]jp_tRWQ16J.full_MSA.fasta.withGaps.html2015-04-17 16:40 1.8MFull MSA before JPred filters in FASTA
[ ]jp_tRWQ16J.hmm2015-04-17 16:39 27KHHMer2 profile of the alignment
[TXT]jp_tRWQ16J.html2015-04-17 16:39 160KHTML prediction and alignment data
[ ]jp_tRWQ16J.input2015-04-17 16:10 149 Raw input data for analysis
[ ]jp_tRWQ16J.jalview2015-04-17 16:39 3.6KJalview annotation file for alignment
[ ]jp_tRWQ16J.jnet2015-04-17 16:39 5.2KJnet secondary structure output
[TXT]jp_tRWQ16J.profile2015-04-17 16:38 23KPSIBLAST profile from alignment
[ ]jp_tRWQ16J.pssm2015-04-17 16:39 31KPSIBLAST PSSM for Jnet
[TXT]jp_tRWQ16J.results.html2016-02-15 12:18 66KJPred results page
[TXT]jp_tRWQ16J.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_tRWQ16J.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_tRWQ16J.seq2015-04-17 16:10 156 Sequence data file
[TXT]jp_tRWQ16J.simple.html2015-04-17 16:39 1.3KBrief HTML: sequence and prediction only
[TXT]jp_tRWQ16J.svg.html2015-04-17 16:40 57KJalview SVG summary of results
[ ]jp_tRWQ16J.tar.gz2015-04-17 16:40 921KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.