JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:46 4.9KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1vr4a1.name2015-04-17 19:14 0 Job name flag file
[ ]jp_gCv1MFK.align2015-04-17 21:46 124KPSIBLAST alignment in FASTA format
[TXT]jp_gCv1MFK.als2015-04-17 21:46 2.5KAlscript command file for PS/PDF output
[ ]jp_gCv1MFK.blast.gz2015-04-17 21:44 516KCompressed PSIBLAST output file
[TXT]jp_gCv1MFK.coils.csv2015-04-17 21:46 648 COILS output in CSV format
[ ]jp_gCv1MFK.coilseq.lupas_142015-04-17 21:46 4.3KCOILS output, window length 14
[ ]jp_gCv1MFK.coilseq.lupas_212015-04-17 21:46 4.3KCOILS output, window length 21
[ ]jp_gCv1MFK.coilseq.lupas_282015-04-17 21:46 4.3KCOILS output, window length 28
[ ]jp_gCv1MFK.concise2015-04-17 21:46 238KPrediction: coiled-coil, solvent, alignment
[ ]jp_gCv1MFK.concise.blc2015-04-17 21:46 123KBLC format prediction and alignment data
[ ]jp_gCv1MFK.concise.fasta2015-04-17 21:46 125KPrediction: coiled-coil, solvent, alignment
[ ]jp_gCv1MFK.concise.pdf2015-04-17 21:46 2.2KPDF prediction and alignment data
[ ]jp_gCv1MFK.concise.ps2015-04-17 21:46 1.3KPrediction: coiled-coil, solvent, alignment
[ ]jp_gCv1MFK.fasta2015-04-17 21:39 117 Input query sequence in FASTA format
[ ]jp_gCv1MFK.full_MSA.fasta2015-04-17 21:44 656KFull MSA before JPred filters in FASTA
[TXT]jp_gCv1MFK.full_MSA.fasta.noGaps.html2015-04-17 21:46 415KFull MSA before JPred filters in FASTA
[TXT]jp_gCv1MFK.full_MSA.fasta.withGaps.html2015-04-17 21:46 3.1MFull MSA before JPred filters in FASTA
[ ]jp_gCv1MFK.hmm2015-04-17 21:46 19KHHMer2 profile of the alignment
[TXT]jp_gCv1MFK.html2015-04-17 21:46 333KHTML prediction and alignment data
[ ]jp_gCv1MFK.input2015-04-17 19:14 110 Raw input data for analysis
[ ]jp_gCv1MFK.jalview2015-04-17 21:46 2.9KJalview annotation file for alignment
[ ]jp_gCv1MFK.jnet2015-04-17 21:46 3.8KJnet secondary structure output
[TXT]jp_gCv1MFK.profile2015-04-17 21:42 17KPSIBLAST profile from alignment
[ ]jp_gCv1MFK.pssm2015-04-17 21:46 22KPSIBLAST PSSM for Jnet
[TXT]jp_gCv1MFK.results.html2016-02-15 12:19 52KJPred results page
[TXT]jp_gCv1MFK.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_gCv1MFK.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_gCv1MFK.seq2015-04-17 19:14 117 Sequence data file
[TXT]jp_gCv1MFK.simple.html2015-04-17 21:46 1.3KBrief HTML: sequence and prediction only
[TXT]jp_gCv1MFK.svg.html2015-04-17 21:46 44KJalview SVG summary of results
[ ]jp_gCv1MFK.tar.gz2015-04-17 21:46 1.2MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.