JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:30 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d1vyra_.name2015-04-17 16:10 0 Job name flag file
[ ]jp_GKAspI3.align2015-04-17 17:27 340KPSIBLAST alignment in FASTA format
[TXT]jp_GKAspI3.als2015-04-17 17:27 4.2KAlscript command file for PS/PDF output
[ ]jp_GKAspI3.blast.gz2015-04-17 17:22 27MCompressed PSIBLAST output file
[TXT]jp_GKAspI3.coils.csv2015-04-17 17:27 2.2KCOILS output in CSV format
[ ]jp_GKAspI3.coilseq.lupas_142015-04-17 17:27 15KCOILS output, window length 14
[ ]jp_GKAspI3.coilseq.lupas_212015-04-17 17:27 15KCOILS output, window length 21
[ ]jp_GKAspI3.coilseq.lupas_282015-04-17 17:27 15KCOILS output, window length 28
[ ]jp_GKAspI3.concise2015-04-17 17:27 676KPrediction: coiled-coil, solvent, alignment
[ ]jp_GKAspI3.concise.blc2015-04-17 17:27 340KBLC format prediction and alignment data
[ ]jp_GKAspI3.concise.fasta2015-04-17 17:27 343KPrediction: coiled-coil, solvent, alignment
[ ]jp_GKAspI3.concise.pdf2015-04-17 17:28 2.4MPDF prediction and alignment data
[ ]jp_GKAspI3.concise.ps2015-04-17 17:27 43MPrediction: coiled-coil, solvent, alignment
[ ]jp_GKAspI3.fasta2015-04-17 16:35 381 Input query sequence in FASTA format
[ ]jp_GKAspI3.full_MSA.fasta2015-04-17 17:25 47MFull MSA before JPred filters in FASTA
[TXT]jp_GKAspI3.full_MSA.fasta.noGaps.html2015-04-17 17:29 4.8MFull MSA before JPred filters in FASTA
[TXT]jp_GKAspI3.full_MSA.fasta.withGaps.html2015-04-17 17:29 128MFull MSA before JPred filters in FASTA
[ ]jp_GKAspI3.hmm2015-04-17 17:27 68KHHMer2 profile of the alignment
[TXT]jp_GKAspI3.html2015-04-17 17:27 540KHTML prediction and alignment data
[ ]jp_GKAspI3.input2015-04-17 16:10 370 Raw input data for analysis
[ ]jp_GKAspI3.jalview2015-04-17 17:27 8.0KJalview annotation file for alignment
[ ]jp_GKAspI3.jnet2015-04-17 17:27 13KJnet secondary structure output
[TXT]jp_GKAspI3.profile2015-04-17 17:11 58KPSIBLAST profile from alignment
[ ]jp_GKAspI3.pssm2015-04-17 17:27 78KPSIBLAST PSSM for Jnet
[TXT]jp_GKAspI3.results.html2016-02-15 12:19 151KJPred results page
[TXT]jp_GKAspI3.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_GKAspI3.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_GKAspI3.seq2015-04-17 16:10 381 Sequence data file
[TXT]jp_GKAspI3.simple.html2015-04-17 17:27 2.1KBrief HTML: sequence and prediction only
[TXT]jp_GKAspI3.svg.html2015-04-17 17:30 143KJalview SVG summary of results
[ ]jp_GKAspI3.tar.gz2015-04-17 17:30 44MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.