JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:54 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d1w23a_.name2015-04-17 19:14 0 Job name flag file
[ ]jp_CI4S3ul.align2015-04-17 21:52 333KPSIBLAST alignment in FASTA format
[TXT]jp_CI4S3ul.als2015-04-17 21:53 4.7KAlscript command file for PS/PDF output
[ ]jp_CI4S3ul.blast.gz2015-04-17 21:50 12MCompressed PSIBLAST output file
[TXT]jp_CI4S3ul.coils.csv2015-04-17 21:53 2.1KCOILS output in CSV format
[ ]jp_CI4S3ul.coilseq.lupas_142015-04-17 21:53 15KCOILS output, window length 14
[ ]jp_CI4S3ul.coilseq.lupas_212015-04-17 21:53 15KCOILS output, window length 21
[ ]jp_CI4S3ul.coilseq.lupas_282015-04-17 21:53 15KCOILS output, window length 28
[ ]jp_CI4S3ul.concise2015-04-17 21:53 664KPrediction: coiled-coil, solvent, alignment
[ ]jp_CI4S3ul.concise.blc2015-04-17 21:53 334KBLC format prediction and alignment data
[ ]jp_CI4S3ul.concise.fasta2015-04-17 21:53 338KPrediction: coiled-coil, solvent, alignment
[ ]jp_CI4S3ul.concise.pdf2015-04-17 21:53 2.3MPDF prediction and alignment data
[ ]jp_CI4S3ul.concise.ps2015-04-17 21:53 42MPrediction: coiled-coil, solvent, alignment
[ ]jp_CI4S3ul.fasta2015-04-17 21:39 378 Input query sequence in FASTA format
[ ]jp_CI4S3ul.full_MSA.fasta2015-04-17 21:51 37MFull MSA before JPred filters in FASTA
[TXT]jp_CI4S3ul.full_MSA.fasta.noGaps.html2015-04-17 21:54 4.3MFull MSA before JPred filters in FASTA
[TXT]jp_CI4S3ul.full_MSA.fasta.withGaps.html2015-04-17 21:54 113MFull MSA before JPred filters in FASTA
[ ]jp_CI4S3ul.hmm2015-04-17 21:53 68KHHMer2 profile of the alignment
[TXT]jp_CI4S3ul.html2015-04-17 21:53 537KHTML prediction and alignment data
[ ]jp_CI4S3ul.input2015-04-17 19:14 367 Raw input data for analysis
[ ]jp_CI4S3ul.jalview2015-04-17 21:53 8.0KJalview annotation file for alignment
[ ]jp_CI4S3ul.jnet2015-04-17 21:53 13KJnet secondary structure output
[TXT]jp_CI4S3ul.profile2015-04-17 21:46 57KPSIBLAST profile from alignment
[ ]jp_CI4S3ul.pssm2015-04-17 21:52 77KPSIBLAST PSSM for Jnet
[TXT]jp_CI4S3ul.results.html2016-02-15 12:19 152KJPred results page
[TXT]jp_CI4S3ul.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_CI4S3ul.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_CI4S3ul.seq2015-04-17 19:14 378 Sequence data file
[TXT]jp_CI4S3ul.simple.html2015-04-17 21:53 2.2KBrief HTML: sequence and prediction only
[TXT]jp_CI4S3ul.svg.html2015-04-17 21:54 144KJalview SVG summary of results
[ ]jp_CI4S3ul.tar.gz2015-04-17 21:54 26MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.