JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:41 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d1w7ca2.name2015-04-17 15:33 0 Job name flag file
[ ]jp_1pOxFA5.align2015-04-17 15:41 42KPSIBLAST alignment in FASTA format
[TXT]jp_1pOxFA5.als2015-04-17 15:41 2.1KAlscript command file for PS/PDF output
[ ]jp_1pOxFA5.blast.gz2015-04-17 15:41 189KCompressed PSIBLAST output file
[TXT]jp_1pOxFA5.coils.csv2015-04-17 15:41 792 COILS output in CSV format
[ ]jp_1pOxFA5.coilseq.lupas_142015-04-17 15:41 5.3KCOILS output, window length 14
[ ]jp_1pOxFA5.coilseq.lupas_212015-04-17 15:41 5.3KCOILS output, window length 21
[ ]jp_1pOxFA5.coilseq.lupas_282015-04-17 15:41 5.3KCOILS output, window length 28
[ ]jp_1pOxFA5.concise2015-04-17 15:41 85KPrediction: coiled-coil, solvent, alignment
[ ]jp_1pOxFA5.concise.blc2015-04-17 15:41 43KBLC format prediction and alignment data
[ ]jp_1pOxFA5.concise.fasta2015-04-17 15:41 43KPrediction: coiled-coil, solvent, alignment
[ ]jp_1pOxFA5.concise.pdf2015-04-17 15:41 285KPDF prediction and alignment data
[ ]jp_1pOxFA5.concise.ps2015-04-17 15:41 4.9MPrediction: coiled-coil, solvent, alignment
[ ]jp_1pOxFA5.fasta2015-04-17 15:38 141 Input query sequence in FASTA format
[ ]jp_1pOxFA5.full_MSA.fasta2015-04-17 15:41 284KFull MSA before JPred filters in FASTA
[TXT]jp_1pOxFA5.full_MSA.fasta.noGaps.html2015-04-17 15:41 135KFull MSA before JPred filters in FASTA
[TXT]jp_1pOxFA5.full_MSA.fasta.withGaps.html2015-04-17 15:41 1.4MFull MSA before JPred filters in FASTA
[ ]jp_1pOxFA5.hmm2015-04-17 15:41 24KHHMer2 profile of the alignment
[TXT]jp_1pOxFA5.html2015-04-17 15:41 109KHTML prediction and alignment data
[ ]jp_1pOxFA5.input2015-04-17 15:33 134 Raw input data for analysis
[ ]jp_1pOxFA5.jalview2015-04-17 15:41 3.3KJalview annotation file for alignment
[ ]jp_1pOxFA5.jnet2015-04-17 15:41 4.7KJnet secondary structure output
[TXT]jp_1pOxFA5.profile2015-04-17 15:40 21KPSIBLAST profile from alignment
[ ]jp_1pOxFA5.pssm2015-04-17 15:41 27KPSIBLAST PSSM for Jnet
[TXT]jp_1pOxFA5.results.html2016-02-15 12:19 59KJPred results page
[TXT]jp_1pOxFA5.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_1pOxFA5.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_1pOxFA5.seq2015-04-17 15:33 141 Sequence data file
[TXT]jp_1pOxFA5.simple.html2015-04-17 15:41 1.3KBrief HTML: sequence and prediction only
[TXT]jp_1pOxFA5.svg.html2015-04-17 15:41 50KJalview SVG summary of results
[ ]jp_1pOxFA5.tar.gz2015-04-17 15:41 665KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.