JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:50 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d1wdds_.name2015-04-17 17:03 0 Job name flag file
[ ]jp_V1gwTV_.align2015-04-17 18:50 56KPSIBLAST alignment in FASTA format
[TXT]jp_V1gwTV_.als2015-04-17 18:50 2.0KAlscript command file for PS/PDF output
[ ]jp_V1gwTV_.blast.gz2015-04-17 18:50 200KCompressed PSIBLAST output file
[TXT]jp_V1gwTV_.coils.csv2015-04-17 18:50 762 COILS output in CSV format
[ ]jp_V1gwTV_.coilseq.lupas_142015-04-17 18:50 5.1KCOILS output, window length 14
[ ]jp_V1gwTV_.coilseq.lupas_212015-04-17 18:50 5.1KCOILS output, window length 21
[ ]jp_V1gwTV_.coilseq.lupas_282015-04-17 18:50 5.1KCOILS output, window length 28
[ ]jp_V1gwTV_.concise2015-04-17 18:50 112KPrediction: coiled-coil, solvent, alignment
[ ]jp_V1gwTV_.concise.blc2015-04-17 18:50 57KBLC format prediction and alignment data
[ ]jp_V1gwTV_.concise.fasta2015-04-17 18:50 57KPrediction: coiled-coil, solvent, alignment
[ ]jp_V1gwTV_.concise.pdf2015-04-17 18:50 315KPDF prediction and alignment data
[ ]jp_V1gwTV_.concise.ps2015-04-17 18:50 6.2MPrediction: coiled-coil, solvent, alignment
[ ]jp_V1gwTV_.fasta2015-04-17 18:04 136 Input query sequence in FASTA format
[ ]jp_V1gwTV_.full_MSA.fasta2015-04-17 18:50 338KFull MSA before JPred filters in FASTA
[TXT]jp_V1gwTV_.full_MSA.fasta.noGaps.html2015-04-17 18:50 224KFull MSA before JPred filters in FASTA
[TXT]jp_V1gwTV_.full_MSA.fasta.withGaps.html2015-04-17 18:50 1.3MFull MSA before JPred filters in FASTA
[ ]jp_V1gwTV_.hmm2015-04-17 18:50 23KHHMer2 profile of the alignment
[TXT]jp_V1gwTV_.html2015-04-17 18:50 145KHTML prediction and alignment data
[ ]jp_V1gwTV_.input2015-04-17 17:03 129 Raw input data for analysis
[ ]jp_V1gwTV_.jalview2015-04-17 18:50 3.2KJalview annotation file for alignment
[ ]jp_V1gwTV_.jnet2015-04-17 18:50 4.5KJnet secondary structure output
[TXT]jp_V1gwTV_.profile2015-04-17 18:40 20KPSIBLAST profile from alignment
[ ]jp_V1gwTV_.pssm2015-04-17 18:50 26KPSIBLAST PSSM for Jnet
[TXT]jp_V1gwTV_.results.html2025-02-12 16:15 57KJPred results page
[TXT]jp_V1gwTV_.results.html.bak2016-02-15 12:19 57KJPred results page
[TXT]jp_V1gwTV_.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_V1gwTV_.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_V1gwTV_.seq2015-04-17 17:03 136 Sequence data file
[TXT]jp_V1gwTV_.simple.html2015-04-17 18:50 1.2KBrief HTML: sequence and prediction only
[TXT]jp_V1gwTV_.svg.html2015-04-17 18:50 49KJalview SVG summary of results
[ ]jp_V1gwTV_.tar.gz2015-04-17 18:50 690KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.