JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:45 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d1whia_.name2015-04-17 19:15 0 Job name flag file
[ ]jp_1kQPf3T.align2015-04-17 21:45 66KPSIBLAST alignment in FASTA format
[TXT]jp_1kQPf3T.als2015-04-17 21:45 2.6KAlscript command file for PS/PDF output
[ ]jp_1kQPf3T.blast.gz2015-04-17 21:44 844KCompressed PSIBLAST output file
[TXT]jp_1kQPf3T.coils.csv2015-04-17 21:45 762 COILS output in CSV format
[ ]jp_1kQPf3T.coilseq.lupas_142015-04-17 21:45 5.1KCOILS output, window length 14
[ ]jp_1kQPf3T.coilseq.lupas_212015-04-17 21:45 5.1KCOILS output, window length 21
[ ]jp_1kQPf3T.coilseq.lupas_282015-04-17 21:45 5.1KCOILS output, window length 28
[ ]jp_1kQPf3T.concise2015-04-17 21:45 132KPrediction: coiled-coil, solvent, alignment
[ ]jp_1kQPf3T.concise.blc2015-04-17 21:45 67KBLC format prediction and alignment data
[ ]jp_1kQPf3T.concise.fasta2015-04-17 21:45 67KPrediction: coiled-coil, solvent, alignment
[ ]jp_1kQPf3T.concise.pdf2015-04-17 21:45 425KPDF prediction and alignment data
[ ]jp_1kQPf3T.concise.ps2015-04-17 21:45 7.8MPrediction: coiled-coil, solvent, alignment
[ ]jp_1kQPf3T.fasta2015-04-17 21:40 136 Input query sequence in FASTA format
[ ]jp_1kQPf3T.full_MSA.fasta2015-04-17 21:44 1.4MFull MSA before JPred filters in FASTA
[TXT]jp_1kQPf3T.full_MSA.fasta.noGaps.html2015-04-17 21:45 509KFull MSA before JPred filters in FASTA
[TXT]jp_1kQPf3T.full_MSA.fasta.withGaps.html2015-04-17 21:45 4.9MFull MSA before JPred filters in FASTA
[ ]jp_1kQPf3T.hmm2015-04-17 21:45 23KHHMer2 profile of the alignment
[TXT]jp_1kQPf3T.html2015-04-17 21:45 170KHTML prediction and alignment data
[ ]jp_1kQPf3T.input2015-04-17 19:15 129 Raw input data for analysis
[ ]jp_1kQPf3T.jalview2015-04-17 21:45 3.2KJalview annotation file for alignment
[ ]jp_1kQPf3T.jnet2015-04-17 21:45 4.5KJnet secondary structure output
[TXT]jp_1kQPf3T.profile2015-04-17 21:43 20KPSIBLAST profile from alignment
[ ]jp_1kQPf3T.pssm2015-04-17 21:45 26KPSIBLAST PSSM for Jnet
[TXT]jp_1kQPf3T.results.html2016-02-15 12:19 59KJPred results page
[TXT]jp_1kQPf3T.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_1kQPf3T.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_1kQPf3T.seq2015-04-17 19:15 136 Sequence data file
[TXT]jp_1kQPf3T.simple.html2015-04-17 21:45 1.3KBrief HTML: sequence and prediction only
[TXT]jp_1kQPf3T.svg.html2015-04-17 21:45 51KJalview SVG summary of results
[ ]jp_1kQPf3T.tar.gz2015-04-17 21:45 1.8MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.