JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:23 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d1wpna_.name2015-04-17 16:11 0 Job name flag file
[ ]jp_06Vj_OF.align2015-04-17 17:22 192KPSIBLAST alignment in FASTA format
[TXT]jp_06Vj_OF.als2015-04-17 17:22 2.8KAlscript command file for PS/PDF output
[ ]jp_06Vj_OF.blast.gz2015-04-17 17:20 5.5MCompressed PSIBLAST output file
[TXT]jp_06Vj_OF.coils.csv2015-04-17 17:22 1.1KCOILS output in CSV format
[ ]jp_06Vj_OF.coilseq.lupas_142015-04-17 17:22 7.9KCOILS output, window length 14
[ ]jp_06Vj_OF.coilseq.lupas_212015-04-17 17:22 7.9KCOILS output, window length 21
[ ]jp_06Vj_OF.coilseq.lupas_282015-04-17 17:22 7.9KCOILS output, window length 28
[ ]jp_06Vj_OF.concise2015-04-17 17:22 378KPrediction: coiled-coil, solvent, alignment
[ ]jp_06Vj_OF.concise.blc2015-04-17 17:22 192KBLC format prediction and alignment data
[ ]jp_06Vj_OF.concise.fasta2015-04-17 17:22 194KPrediction: coiled-coil, solvent, alignment
[ ]jp_06Vj_OF.concise.pdf2015-04-17 17:22 1.3MPDF prediction and alignment data
[ ]jp_06Vj_OF.concise.ps2015-04-17 17:22 24MPrediction: coiled-coil, solvent, alignment
[ ]jp_06Vj_OF.fasta2015-04-17 16:36 202 Input query sequence in FASTA format
[ ]jp_06Vj_OF.full_MSA.fasta2015-04-17 17:21 13MFull MSA before JPred filters in FASTA
[TXT]jp_06Vj_OF.full_MSA.fasta.noGaps.html2015-04-17 17:23 1.8MFull MSA before JPred filters in FASTA
[TXT]jp_06Vj_OF.full_MSA.fasta.withGaps.html2015-04-17 17:23 36MFull MSA before JPred filters in FASTA
[ ]jp_06Vj_OF.hmm2015-04-17 17:22 35KHHMer2 profile of the alignment
[TXT]jp_06Vj_OF.html2015-04-17 17:22 392KHTML prediction and alignment data
[ ]jp_06Vj_OF.input2015-04-17 16:11 194 Raw input data for analysis
[ ]jp_06Vj_OF.jalview2015-04-17 17:22 4.6KJalview annotation file for alignment
[ ]jp_06Vj_OF.jnet2015-04-17 17:22 6.9KJnet secondary structure output
[TXT]jp_06Vj_OF.profile2015-04-17 17:08 30KPSIBLAST profile from alignment
[ ]jp_06Vj_OF.pssm2015-04-17 17:22 40KPSIBLAST PSSM for Jnet
[TXT]jp_06Vj_OF.results.html2016-02-15 12:19 83KJPred results page
[TXT]jp_06Vj_OF.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_06Vj_OF.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_06Vj_OF.seq2015-04-17 16:11 202 Sequence data file
[TXT]jp_06Vj_OF.simple.html2015-04-17 17:22 1.5KBrief HTML: sequence and prediction only
[TXT]jp_06Vj_OF.svg.html2015-04-17 17:23 75KJalview SVG summary of results
[ ]jp_06Vj_OF.tar.gz2015-04-17 17:23 11MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.