JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:32 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d1wqjb1.name2015-04-17 17:23 0 Job name flag file
[ ]jp_VaJ6fmk.align2015-04-17 18:32 30KPSIBLAST alignment in FASTA format
[TXT]jp_VaJ6fmk.als2015-04-17 18:32 1.7KAlscript command file for PS/PDF output
[ ]jp_VaJ6fmk.blast.gz2015-04-17 18:32 138KCompressed PSIBLAST output file
[TXT]jp_VaJ6fmk.coils.csv2015-04-17 18:32 510 COILS output in CSV format
[ ]jp_VaJ6fmk.coilseq.lupas_142015-04-17 18:32 3.4KCOILS output, window length 14
[ ]jp_VaJ6fmk.coilseq.lupas_212015-04-17 18:32 3.4KCOILS output, window length 21
[ ]jp_VaJ6fmk.coilseq.lupas_282015-04-17 18:32 3.4KCOILS output, window length 28
[ ]jp_VaJ6fmk.concise2015-04-17 18:32 60KPrediction: coiled-coil, solvent, alignment
[ ]jp_VaJ6fmk.concise.blc2015-04-17 18:32 31KBLC format prediction and alignment data
[ ]jp_VaJ6fmk.concise.fasta2015-04-17 18:32 31KPrediction: coiled-coil, solvent, alignment
[ ]jp_VaJ6fmk.concise.pdf2015-04-17 18:32 173KPDF prediction and alignment data
[ ]jp_VaJ6fmk.concise.ps2015-04-17 18:32 3.2MPrediction: coiled-coil, solvent, alignment
[ ]jp_VaJ6fmk.fasta2015-04-17 18:30 94 Input query sequence in FASTA format
[ ]jp_VaJ6fmk.full_MSA.fasta2015-04-17 18:32 244KFull MSA before JPred filters in FASTA
[TXT]jp_VaJ6fmk.full_MSA.fasta.noGaps.html2015-04-17 18:32 156KFull MSA before JPred filters in FASTA
[TXT]jp_VaJ6fmk.full_MSA.fasta.withGaps.html2015-04-17 18:32 1.1MFull MSA before JPred filters in FASTA
[ ]jp_VaJ6fmk.hmm2015-04-17 18:32 15KHHMer2 profile of the alignment
[TXT]jp_VaJ6fmk.html2015-04-17 18:32 95KHTML prediction and alignment data
[ ]jp_VaJ6fmk.input2015-04-17 17:23 87 Raw input data for analysis
[ ]jp_VaJ6fmk.jalview2015-04-17 18:32 2.3KJalview annotation file for alignment
[ ]jp_VaJ6fmk.jnet2015-04-17 18:32 3.0KJnet secondary structure output
[TXT]jp_VaJ6fmk.profile2015-04-17 18:31 13KPSIBLAST profile from alignment
[ ]jp_VaJ6fmk.pssm2015-04-17 18:32 17KPSIBLAST PSSM for Jnet
[TXT]jp_VaJ6fmk.results.html2016-02-15 12:19 41KJPred results page
[TXT]jp_VaJ6fmk.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_VaJ6fmk.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_VaJ6fmk.seq2015-04-17 17:23 94 Sequence data file
[TXT]jp_VaJ6fmk.simple.html2015-04-17 18:32 1.1KBrief HTML: sequence and prediction only
[TXT]jp_VaJ6fmk.svg.html2015-04-17 18:32 33KJalview SVG summary of results
[ ]jp_VaJ6fmk.tar.gz2015-04-17 18:32 462KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.