JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 20:45 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d1wuba_.name2015-04-17 18:37 0 Job name flag file
[ ]jp_rgmNeIB.align2015-04-17 20:44 209KPSIBLAST alignment in FASTA format
[TXT]jp_rgmNeIB.als2015-04-17 20:44 3.0KAlscript command file for PS/PDF output
[ ]jp_rgmNeIB.blast.gz2015-04-17 20:43 3.2MCompressed PSIBLAST output file
[TXT]jp_rgmNeIB.coils.csv2015-04-17 20:44 1.1KCOILS output in CSV format
[ ]jp_rgmNeIB.coilseq.lupas_142015-04-17 20:44 7.4KCOILS output, window length 14
[ ]jp_rgmNeIB.coilseq.lupas_212015-04-17 20:44 7.4KCOILS output, window length 21
[ ]jp_rgmNeIB.coilseq.lupas_282015-04-17 20:44 7.4KCOILS output, window length 28
[ ]jp_rgmNeIB.concise2015-04-17 20:44 407KPrediction: coiled-coil, solvent, alignment
[ ]jp_rgmNeIB.concise.blc2015-04-17 20:44 208KBLC format prediction and alignment data
[ ]jp_rgmNeIB.concise.fasta2015-04-17 20:44 210KPrediction: coiled-coil, solvent, alignment
[ ]jp_rgmNeIB.concise.pdf2015-04-17 20:44 1.4MPDF prediction and alignment data
[ ]jp_rgmNeIB.concise.ps2015-04-17 20:44 25MPrediction: coiled-coil, solvent, alignment
[ ]jp_rgmNeIB.fasta2015-04-17 20:36 191 Input query sequence in FASTA format
[ ]jp_rgmNeIB.full_MSA.fasta2015-04-17 20:43 5.0MFull MSA before JPred filters in FASTA
[TXT]jp_rgmNeIB.full_MSA.fasta.noGaps.html2015-04-17 20:44 1.2MFull MSA before JPred filters in FASTA
[TXT]jp_rgmNeIB.full_MSA.fasta.withGaps.html2015-04-17 20:44 19MFull MSA before JPred filters in FASTA
[ ]jp_rgmNeIB.hmm2015-04-17 20:44 33KHHMer2 profile of the alignment
[TXT]jp_rgmNeIB.html2015-04-17 20:44 430KHTML prediction and alignment data
[ ]jp_rgmNeIB.input2015-04-17 18:37 183 Raw input data for analysis
[ ]jp_rgmNeIB.jalview2015-04-17 20:44 4.3KJalview annotation file for alignment
[ ]jp_rgmNeIB.jnet2015-04-17 20:44 6.5KJnet secondary structure output
[TXT]jp_rgmNeIB.profile2015-04-17 20:40 28KPSIBLAST profile from alignment
[ ]jp_rgmNeIB.pssm2015-04-17 20:44 38KPSIBLAST PSSM for Jnet
[TXT]jp_rgmNeIB.results.html2016-02-15 12:19 78KJPred results page
[TXT]jp_rgmNeIB.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_rgmNeIB.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_rgmNeIB.seq2015-04-17 18:37 191 Sequence data file
[TXT]jp_rgmNeIB.simple.html2015-04-17 20:44 1.5KBrief HTML: sequence and prediction only
[TXT]jp_rgmNeIB.svg.html2015-04-17 20:44 70KJalview SVG summary of results
[ ]jp_rgmNeIB.tar.gz2015-04-17 20:45 7.0MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.