JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:37 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d1wuis_.name2015-04-17 17:23 0 Job name flag file
[ ]jp_Dvryc2u.align2015-04-17 18:37 144KPSIBLAST alignment in FASTA format
[TXT]jp_Dvryc2u.als2015-04-17 18:37 4.1KAlscript command file for PS/PDF output
[ ]jp_Dvryc2u.blast.gz2015-04-17 18:36 1.9MCompressed PSIBLAST output file
[TXT]jp_Dvryc2u.coils.csv2015-04-17 18:37 1.6KCOILS output in CSV format
[ ]jp_Dvryc2u.coilseq.lupas_142015-04-17 18:37 11KCOILS output, window length 14
[ ]jp_Dvryc2u.coilseq.lupas_212015-04-17 18:37 11KCOILS output, window length 21
[ ]jp_Dvryc2u.coilseq.lupas_282015-04-17 18:37 11KCOILS output, window length 28
[ ]jp_Dvryc2u.concise2015-04-17 18:37 291KPrediction: coiled-coil, solvent, alignment
[ ]jp_Dvryc2u.concise.blc2015-04-17 18:37 146KBLC format prediction and alignment data
[ ]jp_Dvryc2u.concise.fasta2015-04-17 18:37 147KPrediction: coiled-coil, solvent, alignment
[ ]jp_Dvryc2u.concise.pdf2015-04-17 18:37 947KPDF prediction and alignment data
[ ]jp_Dvryc2u.concise.ps2015-04-17 18:37 17MPrediction: coiled-coil, solvent, alignment
[ ]jp_Dvryc2u.fasta2015-04-17 18:30 283 Input query sequence in FASTA format
[ ]jp_Dvryc2u.full_MSA.fasta2015-04-17 18:36 5.2MFull MSA before JPred filters in FASTA
[TXT]jp_Dvryc2u.full_MSA.fasta.noGaps.html2015-04-17 18:37 1.0MFull MSA before JPred filters in FASTA
[TXT]jp_Dvryc2u.full_MSA.fasta.withGaps.html2015-04-17 18:37 19MFull MSA before JPred filters in FASTA
[ ]jp_Dvryc2u.hmm2015-04-17 18:37 50KHHMer2 profile of the alignment
[TXT]jp_Dvryc2u.html2015-04-17 18:37 263KHTML prediction and alignment data
[ ]jp_Dvryc2u.input2015-04-17 17:23 274 Raw input data for analysis
[ ]jp_Dvryc2u.jalview2015-04-17 18:37 6.0KJalview annotation file for alignment
[ ]jp_Dvryc2u.jnet2015-04-17 18:37 9.8KJnet secondary structure output
[TXT]jp_Dvryc2u.profile2015-04-17 18:35 43KPSIBLAST profile from alignment
[ ]jp_Dvryc2u.pssm2015-04-17 18:37 57KPSIBLAST PSSM for Jnet
[TXT]jp_Dvryc2u.results.html2016-02-15 12:19 116KJPred results page
[TXT]jp_Dvryc2u.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_Dvryc2u.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_Dvryc2u.seq2015-04-17 17:23 283 Sequence data file
[TXT]jp_Dvryc2u.simple.html2015-04-17 18:37 1.9KBrief HTML: sequence and prediction only
[TXT]jp_Dvryc2u.svg.html2015-04-17 18:37 107KJalview SVG summary of results
[ ]jp_Dvryc2u.tar.gz2015-04-17 18:37 4.5MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.