JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:52 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d1x2ia1.name2015-04-17 19:15 0 Job name flag file
[ ]jp_yzd4QMp.align2015-04-17 21:51 74KPSIBLAST alignment in FASTA format
[TXT]jp_yzd4QMp.als2015-04-17 21:51 1.9KAlscript command file for PS/PDF output
[ ]jp_yzd4QMp.blast.gz2015-04-17 21:49 2.8MCompressed PSIBLAST output file
[TXT]jp_yzd4QMp.coils.csv2015-04-17 21:51 438 COILS output in CSV format
[ ]jp_yzd4QMp.coilseq.lupas_142015-04-17 21:51 2.9KCOILS output, window length 14
[ ]jp_yzd4QMp.coilseq.lupas_212015-04-17 21:51 2.9KCOILS output, window length 21
[ ]jp_yzd4QMp.coilseq.lupas_282015-04-17 21:51 2.9KCOILS output, window length 28
[ ]jp_yzd4QMp.concise2015-04-17 21:51 142KPrediction: coiled-coil, solvent, alignment
[ ]jp_yzd4QMp.concise.blc2015-04-17 21:51 74KBLC format prediction and alignment data
[ ]jp_yzd4QMp.concise.fasta2015-04-17 21:51 75KPrediction: coiled-coil, solvent, alignment
[ ]jp_yzd4QMp.concise.pdf2015-04-17 21:51 449KPDF prediction and alignment data
[ ]jp_yzd4QMp.concise.ps2015-04-17 21:51 7.9MPrediction: coiled-coil, solvent, alignment
[ ]jp_yzd4QMp.fasta2015-04-17 21:40 81 Input query sequence in FASTA format
[ ]jp_yzd4QMp.full_MSA.fasta2015-04-17 21:50 7.1MFull MSA before JPred filters in FASTA
[TXT]jp_yzd4QMp.full_MSA.fasta.noGaps.html2015-04-17 21:51 2.0MFull MSA before JPred filters in FASTA
[TXT]jp_yzd4QMp.full_MSA.fasta.withGaps.html2015-04-17 21:51 23MFull MSA before JPred filters in FASTA
[ ]jp_yzd4QMp.hmm2015-04-17 21:51 13KHHMer2 profile of the alignment
[TXT]jp_yzd4QMp.html2015-04-17 21:51 250KHTML prediction and alignment data
[ ]jp_yzd4QMp.input2015-04-17 19:15 75 Raw input data for analysis
[ ]jp_yzd4QMp.jalview2015-04-17 21:51 2.2KJalview annotation file for alignment
[ ]jp_yzd4QMp.jnet2015-04-17 21:51 2.6KJnet secondary structure output
[TXT]jp_yzd4QMp.profile2015-04-17 21:46 11KPSIBLAST profile from alignment
[ ]jp_yzd4QMp.pssm2015-04-17 21:51 15KPSIBLAST PSSM for Jnet
[TXT]jp_yzd4QMp.results.html2016-02-15 12:19 39KJPred results page
[TXT]jp_yzd4QMp.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_yzd4QMp.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_yzd4QMp.seq2015-04-17 19:15 81 Sequence data file
[TXT]jp_yzd4QMp.simple.html2015-04-17 21:51 1.1KBrief HTML: sequence and prediction only
[TXT]jp_yzd4QMp.svg.html2015-04-17 21:52 31KJalview SVG summary of results
[ ]jp_yzd4QMp.tar.gz2015-04-17 21:52 5.5MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.