JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:53 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d1xeoa_.name2015-04-17 16:12 0 Job name flag file
[ ]jp_aUgRXhf.align2015-04-17 16:52 171KPSIBLAST alignment in FASTA format
[TXT]jp_aUgRXhf.als2015-04-17 16:52 3.2KAlscript command file for PS/PDF output
[ ]jp_aUgRXhf.blast.gz2015-04-17 16:51 5.0MCompressed PSIBLAST output file
[TXT]jp_aUgRXhf.coils.csv2015-04-17 16:52 1.0KCOILS output in CSV format
[ ]jp_aUgRXhf.coilseq.lupas_142015-04-17 16:52 6.9KCOILS output, window length 14
[ ]jp_aUgRXhf.coilseq.lupas_212015-04-17 16:52 6.9KCOILS output, window length 21
[ ]jp_aUgRXhf.coilseq.lupas_282015-04-17 16:52 6.9KCOILS output, window length 28
[ ]jp_aUgRXhf.concise2015-04-17 16:52 334KPrediction: coiled-coil, solvent, alignment
[ ]jp_aUgRXhf.concise.blc2015-04-17 16:52 171KBLC format prediction and alignment data
[ ]jp_aUgRXhf.concise.fasta2015-04-17 16:52 173KPrediction: coiled-coil, solvent, alignment
[ ]jp_aUgRXhf.concise.pdf2015-04-17 16:53 1.2MPDF prediction and alignment data
[ ]jp_aUgRXhf.concise.ps2015-04-17 16:53 21MPrediction: coiled-coil, solvent, alignment
[ ]jp_aUgRXhf.fasta2015-04-17 16:36 180 Input query sequence in FASTA format
[ ]jp_aUgRXhf.full_MSA.fasta2015-04-17 16:52 9.5MFull MSA before JPred filters in FASTA
[TXT]jp_aUgRXhf.full_MSA.fasta.noGaps.html2015-04-17 16:53 1.7MFull MSA before JPred filters in FASTA
[TXT]jp_aUgRXhf.full_MSA.fasta.withGaps.html2015-04-17 16:53 29MFull MSA before JPred filters in FASTA
[ ]jp_aUgRXhf.hmm2015-04-17 16:52 31KHHMer2 profile of the alignment
[TXT]jp_aUgRXhf.html2015-04-17 16:52 365KHTML prediction and alignment data
[ ]jp_aUgRXhf.input2015-04-17 16:12 172 Raw input data for analysis
[ ]jp_aUgRXhf.jalview2015-04-17 16:52 4.1KJalview annotation file for alignment
[ ]jp_aUgRXhf.jnet2015-04-17 16:52 6.1KJnet secondary structure output
[TXT]jp_aUgRXhf.profile2015-04-17 16:45 27KPSIBLAST profile from alignment
[ ]jp_aUgRXhf.pssm2015-04-17 16:52 35KPSIBLAST PSSM for Jnet
[TXT]jp_aUgRXhf.results.html2016-02-15 12:19 76KJPred results page
[TXT]jp_aUgRXhf.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_aUgRXhf.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_aUgRXhf.seq2015-04-17 16:12 180 Sequence data file
[TXT]jp_aUgRXhf.simple.html2015-04-17 16:52 1.6KBrief HTML: sequence and prediction only
[TXT]jp_aUgRXhf.svg.html2015-04-17 16:53 68KJalview SVG summary of results
[ ]jp_aUgRXhf.tar.gz2015-04-17 16:53 9.5MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.