JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[ ]jp_9HM3PBj.input2015-04-17 16:47 212 Raw input data for analysis
[ ]jp_9HM3PBj.seq2015-04-17 16:47 220 Sequence data file
[TXT]d1xkra_.name2015-04-17 16:47 0 Job name flag file
[ ]jp_9HM3PBj.fasta2015-04-17 17:34 220 Input query sequence in FASTA format
[TXT]jp_9HM3PBj.profile2015-04-17 17:38 33KPSIBLAST profile from alignment
[ ]jp_9HM3PBj.blast.gz2015-04-17 17:40 1.2MCompressed PSIBLAST output file
[ ]jp_9HM3PBj.full_MSA.fasta2015-04-17 17:40 1.9MFull MSA before JPred filters in FASTA
[ ]jp_9HM3PBj.align2015-04-17 17:40 160KPSIBLAST alignment in FASTA format
[ ]jp_9HM3PBj.pssm2015-04-17 17:40 44KPSIBLAST PSSM for Jnet
[ ]jp_9HM3PBj.hmm2015-04-17 17:40 38KHHMer2 profile of the alignment
[ ]jp_9HM3PBj.jnet2015-04-17 17:40 7.5KJnet secondary structure output
[ ]jp_9HM3PBj.coilseq.lupas_212015-04-17 17:40 8.6KCOILS output, window length 21
[ ]jp_9HM3PBj.coilseq.lupas_142015-04-17 17:40 8.6KCOILS output, window length 14
[ ]jp_9HM3PBj.coilseq.lupas_282015-04-17 17:40 8.6KCOILS output, window length 28
[TXT]jp_9HM3PBj.coils.csv2015-04-17 17:40 1.2KCOILS output in CSV format
[ ]jp_9HM3PBj.concise2015-04-17 17:40 318KPrediction: coiled-coil, solvent, alignment
[TXT]jp_9HM3PBj.html2015-04-17 17:40 321KHTML prediction and alignment data
[TXT]jp_9HM3PBj.simple.html2015-04-17 17:40 1.6KBrief HTML: sequence and prediction only
[ ]jp_9HM3PBj.jalview2015-04-17 17:40 5.0KJalview annotation file for alignment
[ ]jp_9HM3PBj.concise.fasta2015-04-17 17:40 162KPrediction: coiled-coil, solvent, alignment
[ ]jp_9HM3PBj.concise.blc2015-04-17 17:40 161KBLC format prediction and alignment data
[TXT]jp_9HM3PBj.als2015-04-17 17:40 3.2KAlscript command file for PS/PDF output
[ ]jp_9HM3PBj.concise.ps2015-04-17 17:40 20MPrediction: coiled-coil, solvent, alignment
[ ]jp_9HM3PBj.concise.pdf2015-04-17 17:41 1.1MPDF prediction and alignment data
[TXT]jp_9HM3PBj.full_MSA.fasta.withGaps.html2015-04-17 17:41 9.1MFull MSA before JPred filters in FASTA
[TXT]jp_9HM3PBj.full_MSA.fasta.noGaps.html2015-04-17 17:41 709KFull MSA before JPred filters in FASTA
[TXT]jp_9HM3PBj.svg.html2015-04-17 17:41 82KJalview SVG summary of results
[TXT]LOG2015-04-17 17:41 4.7KJPred server log file
[ ]jp_9HM3PBj.tar.gz2015-04-17 17:41 3.6MArchive containing complete results
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]jp_9HM3PBj.results.html2016-02-15 12:19 90KJPred results page
[TXT]jp_9HM3PBj.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_9HM3PBj.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.