JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:39 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d1xmba2.name2015-04-17 16:47 0 Job name flag file
[ ]jp__zBQM2d.align2015-04-17 17:39 105KPSIBLAST alignment in FASTA format
[TXT]jp__zBQM2d.als2015-04-17 17:39 2.1KAlscript command file for PS/PDF output
[ ]jp__zBQM2d.blast.gz2015-04-17 17:38 2.6MCompressed PSIBLAST output file
[TXT]jp__zBQM2d.coils.csv2015-04-17 17:39 642 COILS output in CSV format
[ ]jp__zBQM2d.coilseq.lupas_142015-04-17 17:39 4.3KCOILS output, window length 14
[ ]jp__zBQM2d.coilseq.lupas_212015-04-17 17:39 4.3KCOILS output, window length 21
[ ]jp__zBQM2d.coilseq.lupas_282015-04-17 17:39 4.3KCOILS output, window length 28
[ ]jp__zBQM2d.concise2015-04-17 17:39 203KPrediction: coiled-coil, solvent, alignment
[ ]jp__zBQM2d.concise.blc2015-04-17 17:39 105KBLC format prediction and alignment data
[ ]jp__zBQM2d.concise.fasta2015-04-17 17:39 106KPrediction: coiled-coil, solvent, alignment
[ ]jp__zBQM2d.concise.pdf2015-04-17 17:39 712KPDF prediction and alignment data
[ ]jp__zBQM2d.concise.ps2015-04-17 17:39 12MPrediction: coiled-coil, solvent, alignment
[ ]jp__zBQM2d.fasta2015-04-17 17:34 116 Input query sequence in FASTA format
[ ]jp__zBQM2d.full_MSA.fasta2015-04-17 17:38 4.4MFull MSA before JPred filters in FASTA
[TXT]jp__zBQM2d.full_MSA.fasta.noGaps.html2015-04-17 17:39 1.4MFull MSA before JPred filters in FASTA
[TXT]jp__zBQM2d.full_MSA.fasta.withGaps.html2015-04-17 17:39 17MFull MSA before JPred filters in FASTA
[ ]jp__zBQM2d.hmm2015-04-17 17:39 19KHHMer2 profile of the alignment
[TXT]jp__zBQM2d.html2015-04-17 17:39 286KHTML prediction and alignment data
[ ]jp__zBQM2d.input2015-04-17 16:47 109 Raw input data for analysis
[ ]jp__zBQM2d.jalview2015-04-17 17:39 2.9KJalview annotation file for alignment
[ ]jp__zBQM2d.jnet2015-04-17 17:39 3.8KJnet secondary structure output
[TXT]jp__zBQM2d.profile2015-04-17 17:37 17KPSIBLAST profile from alignment
[ ]jp__zBQM2d.pssm2015-04-17 17:39 22KPSIBLAST PSSM for Jnet
[TXT]jp__zBQM2d.results.html2016-02-15 12:19 50KJPred results page
[TXT]jp__zBQM2d.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp__zBQM2d.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp__zBQM2d.seq2015-04-17 16:47 116 Sequence data file
[TXT]jp__zBQM2d.simple.html2015-04-17 17:39 1.2KBrief HTML: sequence and prediction only
[TXT]jp__zBQM2d.svg.html2015-04-17 17:39 42KJalview SVG summary of results
[ ]jp__zBQM2d.tar.gz2015-04-17 17:39 5.4MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.