JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:43 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d1xvsa_.name2015-04-17 18:01 0 Job name flag file
[ ]jp_2DPPRVc.align2015-04-17 19:43 106KPSIBLAST alignment in FASTA format
[TXT]jp_2DPPRVc.als2015-04-17 19:43 2.7KAlscript command file for PS/PDF output
[ ]jp_2DPPRVc.blast.gz2015-04-17 19:42 703KCompressed PSIBLAST output file
[TXT]jp_2DPPRVc.coils.csv2015-04-17 19:43 774 COILS output in CSV format
[ ]jp_2DPPRVc.coilseq.lupas_142015-04-17 19:43 5.2KCOILS output, window length 14
[ ]jp_2DPPRVc.coilseq.lupas_212015-04-17 19:43 5.2KCOILS output, window length 21
[ ]jp_2DPPRVc.coilseq.lupas_282015-04-17 19:43 5.2KCOILS output, window length 28
[ ]jp_2DPPRVc.concise2015-04-17 19:43 206KPrediction: coiled-coil, solvent, alignment
[ ]jp_2DPPRVc.concise.blc2015-04-17 19:43 106KBLC format prediction and alignment data
[ ]jp_2DPPRVc.concise.fasta2015-04-17 19:43 107KPrediction: coiled-coil, solvent, alignment
[ ]jp_2DPPRVc.concise.pdf2015-04-17 19:43 700KPDF prediction and alignment data
[ ]jp_2DPPRVc.concise.ps2015-04-17 19:43 12MPrediction: coiled-coil, solvent, alignment
[ ]jp_2DPPRVc.fasta2015-04-17 19:37 138 Input query sequence in FASTA format
[ ]jp_2DPPRVc.full_MSA.fasta2015-04-17 19:42 1.2MFull MSA before JPred filters in FASTA
[TXT]jp_2DPPRVc.full_MSA.fasta.noGaps.html2015-04-17 19:43 328KFull MSA before JPred filters in FASTA
[TXT]jp_2DPPRVc.full_MSA.fasta.withGaps.html2015-04-17 19:43 4.2MFull MSA before JPred filters in FASTA
[ ]jp_2DPPRVc.hmm2015-04-17 19:43 23KHHMer2 profile of the alignment
[TXT]jp_2DPPRVc.html2015-04-17 19:43 262KHTML prediction and alignment data
[ ]jp_2DPPRVc.input2015-04-17 18:01 131 Raw input data for analysis
[ ]jp_2DPPRVc.jalview2015-04-17 19:43 3.3KJalview annotation file for alignment
[ ]jp_2DPPRVc.jnet2015-04-17 19:43 4.6KJnet secondary structure output
[TXT]jp_2DPPRVc.profile2015-04-17 19:40 20KPSIBLAST profile from alignment
[ ]jp_2DPPRVc.pssm2015-04-17 19:43 27KPSIBLAST PSSM for Jnet
[TXT]jp_2DPPRVc.results.html2016-02-15 12:19 59KJPred results page
[TXT]jp_2DPPRVc.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_2DPPRVc.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_2DPPRVc.seq2015-04-17 18:01 138 Sequence data file
[TXT]jp_2DPPRVc.simple.html2015-04-17 19:43 1.3KBrief HTML: sequence and prediction only
[TXT]jp_2DPPRVc.svg.html2015-04-17 19:43 50KJalview SVG summary of results
[ ]jp_2DPPRVc.tar.gz2015-04-17 19:43 1.9MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.