JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:44 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d1y0pa3.name2015-04-17 18:01 0 Job name flag file
[ ]jp_tpELI5x.align2015-04-17 19:43 116KPSIBLAST alignment in FASTA format
[TXT]jp_tpELI5x.als2015-04-17 19:43 2.5KAlscript command file for PS/PDF output
[ ]jp_tpELI5x.blast.gz2015-04-17 19:42 9.1MCompressed PSIBLAST output file
[TXT]jp_tpELI5x.coils.csv2015-04-17 19:43 906 COILS output in CSV format
[ ]jp_tpELI5x.coilseq.lupas_142015-04-17 19:43 6.1KCOILS output, window length 14
[ ]jp_tpELI5x.coilseq.lupas_212015-04-17 19:43 6.1KCOILS output, window length 21
[ ]jp_tpELI5x.coilseq.lupas_282015-04-17 19:43 6.1KCOILS output, window length 28
[ ]jp_tpELI5x.concise2015-04-17 19:43 227KPrediction: coiled-coil, solvent, alignment
[ ]jp_tpELI5x.concise.blc2015-04-17 19:43 116KBLC format prediction and alignment data
[ ]jp_tpELI5x.concise.fasta2015-04-17 19:43 118KPrediction: coiled-coil, solvent, alignment
[ ]jp_tpELI5x.concise.pdf2015-04-17 19:43 793KPDF prediction and alignment data
[ ]jp_tpELI5x.concise.ps2015-04-17 19:43 14MPrediction: coiled-coil, solvent, alignment
[ ]jp_tpELI5x.fasta2015-04-17 19:37 161 Input query sequence in FASTA format
[ ]jp_tpELI5x.full_MSA.fasta2015-04-17 19:42 20MFull MSA before JPred filters in FASTA
[TXT]jp_tpELI5x.full_MSA.fasta.noGaps.html2015-04-17 19:44 2.0MFull MSA before JPred filters in FASTA
[TXT]jp_tpELI5x.full_MSA.fasta.withGaps.html2015-04-17 19:44 46MFull MSA before JPred filters in FASTA
[ ]jp_tpELI5x.hmm2015-04-17 19:43 27KHHMer2 profile of the alignment
[TXT]jp_tpELI5x.html2015-04-17 19:43 265KHTML prediction and alignment data
[ ]jp_tpELI5x.input2015-04-17 18:01 153 Raw input data for analysis
[ ]jp_tpELI5x.jalview2015-04-17 19:43 3.7KJalview annotation file for alignment
[ ]jp_tpELI5x.jnet2015-04-17 19:43 5.4KJnet secondary structure output
[TXT]jp_tpELI5x.profile2015-04-17 19:40 24KPSIBLAST profile from alignment
[ ]jp_tpELI5x.pssm2015-04-17 19:43 31KPSIBLAST PSSM for Jnet
[TXT]jp_tpELI5x.results.html2016-02-15 12:19 67KJPred results page
[TXT]jp_tpELI5x.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_tpELI5x.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_tpELI5x.seq2015-04-17 18:01 161 Sequence data file
[TXT]jp_tpELI5x.simple.html2015-04-17 19:43 1.4KBrief HTML: sequence and prediction only
[TXT]jp_tpELI5x.svg.html2015-04-17 19:44 59KJalview SVG summary of results
[ ]jp_tpELI5x.tar.gz2015-04-17 19:44 14MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.