JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:20 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d1y5ic1.name2015-04-17 17:11 0 Job name flag file
[ ]jp_50RR3kh.align2015-04-17 18:20 95KPSIBLAST alignment in FASTA format
[TXT]jp_50RR3kh.als2015-04-17 18:20 3.6KAlscript command file for PS/PDF output
[ ]jp_50RR3kh.blast.gz2015-04-17 18:19 332KCompressed PSIBLAST output file
[TXT]jp_50RR3kh.coils.csv2015-04-17 18:20 1.3KCOILS output in CSV format
[ ]jp_50RR3kh.coilseq.lupas_142015-04-17 18:20 9.1KCOILS output, window length 14
[ ]jp_50RR3kh.coilseq.lupas_212015-04-17 18:20 9.1KCOILS output, window length 21
[ ]jp_50RR3kh.coilseq.lupas_282015-04-17 18:20 9.1KCOILS output, window length 28
[ ]jp_50RR3kh.concise2015-04-17 18:20 191KPrediction: coiled-coil, solvent, alignment
[ ]jp_50RR3kh.concise.blc2015-04-17 18:20 96KBLC format prediction and alignment data
[ ]jp_50RR3kh.concise.fasta2015-04-17 18:20 97KPrediction: coiled-coil, solvent, alignment
[ ]jp_50RR3kh.concise.pdf2015-04-17 18:20 671KPDF prediction and alignment data
[ ]jp_50RR3kh.concise.ps2015-04-17 18:20 12MPrediction: coiled-coil, solvent, alignment
[ ]jp_50RR3kh.fasta2015-04-17 18:15 233 Input query sequence in FASTA format
[ ]jp_50RR3kh.full_MSA.fasta2015-04-17 18:20 480KFull MSA before JPred filters in FASTA
[TXT]jp_50RR3kh.full_MSA.fasta.noGaps.html2015-04-17 18:20 252KFull MSA before JPred filters in FASTA
[TXT]jp_50RR3kh.full_MSA.fasta.withGaps.html2015-04-17 18:20 1.8MFull MSA before JPred filters in FASTA
[ ]jp_50RR3kh.hmm2015-04-17 18:20 41KHHMer2 profile of the alignment
[TXT]jp_50RR3kh.html2015-04-17 18:20 195KHTML prediction and alignment data
[ ]jp_50RR3kh.input2015-04-17 17:11 224 Raw input data for analysis
[ ]jp_50RR3kh.jalview2015-04-17 18:20 5.3KJalview annotation file for alignment
[ ]jp_50RR3kh.jnet2015-04-17 18:20 8.0KJnet secondary structure output
[TXT]jp_50RR3kh.profile2015-04-17 18:17 35KPSIBLAST profile from alignment
[ ]jp_50RR3kh.pssm2015-04-17 18:20 47KPSIBLAST PSSM for Jnet
[TXT]jp_50RR3kh.results.html2016-02-15 12:19 98KJPred results page
[TXT]jp_50RR3kh.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_50RR3kh.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_50RR3kh.seq2015-04-17 17:11 233 Sequence data file
[TXT]jp_50RR3kh.simple.html2015-04-17 18:20 1.7KBrief HTML: sequence and prediction only
[TXT]jp_50RR3kh.svg.html2015-04-17 18:20 90KJalview SVG summary of results
[ ]jp_50RR3kh.tar.gz2015-04-17 18:20 1.3MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.