JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:50 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d1yc9a_.name2015-04-17 17:25 0 Job name flag file
[ ]jp_vwyLz5F.align2015-04-17 19:48 382KPSIBLAST alignment in FASTA format
[TXT]jp_vwyLz5F.als2015-04-17 19:48 3.2KAlscript command file for PS/PDF output
[ ]jp_vwyLz5F.blast.gz2015-04-17 19:32 28MCompressed PSIBLAST output file
[TXT]jp_vwyLz5F.coils.csv2015-04-17 19:48 2.4KCOILS output in CSV format
[ ]jp_vwyLz5F.coilseq.lupas_142015-04-17 19:48 17KCOILS output, window length 14
[ ]jp_vwyLz5F.coilseq.lupas_212015-04-17 19:48 17KCOILS output, window length 21
[ ]jp_vwyLz5F.coilseq.lupas_282015-04-17 19:48 17KCOILS output, window length 28
[ ]jp_vwyLz5F.concise2015-04-17 19:48 763KPrediction: coiled-coil, solvent, alignment
[ ]jp_vwyLz5F.concise.blc2015-04-17 19:48 383KBLC format prediction and alignment data
[ ]jp_vwyLz5F.concise.fasta2015-04-17 19:48 387KPrediction: coiled-coil, solvent, alignment
[ ]jp_vwyLz5F.concise.pdf2015-04-17 19:49 2.8MPDF prediction and alignment data
[ ]jp_vwyLz5F.concise.ps2015-04-17 19:48 50MPrediction: coiled-coil, solvent, alignment
[ ]jp_vwyLz5F.fasta2015-04-17 18:33 429 Input query sequence in FASTA format
[ ]jp_vwyLz5F.full_MSA.fasta2015-04-17 19:46 50MFull MSA before JPred filters in FASTA
[TXT]jp_vwyLz5F.full_MSA.fasta.noGaps.html2015-04-17 19:50 5.2MFull MSA before JPred filters in FASTA
[TXT]jp_vwyLz5F.full_MSA.fasta.withGaps.html2015-04-17 19:50 124MFull MSA before JPred filters in FASTA
[ ]jp_vwyLz5F.hmm2015-04-17 19:48 77KHHMer2 profile of the alignment
[TXT]jp_vwyLz5F.html2015-04-17 19:48 596KHTML prediction and alignment data
[ ]jp_vwyLz5F.input2015-04-17 17:25 418 Raw input data for analysis
[ ]jp_vwyLz5F.jalview2015-04-17 19:48 9.3KJalview annotation file for alignment
[ ]jp_vwyLz5F.jnet2015-04-17 19:48 15KJnet secondary structure output
[TXT]jp_vwyLz5F.profile2015-04-17 19:20 66KPSIBLAST profile from alignment
[ ]jp_vwyLz5F.pssm2015-04-17 19:48 88KPSIBLAST PSSM for Jnet
[TXT]jp_vwyLz5F.results.html2016-02-15 12:19 164KJPred results page
[TXT]jp_vwyLz5F.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_vwyLz5F.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_vwyLz5F.seq2015-04-17 17:25 429 Sequence data file
[TXT]jp_vwyLz5F.simple.html2015-04-17 19:48 2.0KBrief HTML: sequence and prediction only
[TXT]jp_vwyLz5F.svg.html2015-04-17 19:50 156KJalview SVG summary of results
[ ]jp_vwyLz5F.tar.gz2015-04-17 19:51 47MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.