JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:40 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d1yu5x_.name2015-04-17 16:47 0 Job name flag file
[ ]jp_rFhtK_I.align2015-04-17 17:40 33KPSIBLAST alignment in FASTA format
[TXT]jp_rFhtK_I.als2015-04-17 17:40 1.8KAlscript command file for PS/PDF output
[ ]jp_rFhtK_I.blast.gz2015-04-17 17:39 328KCompressed PSIBLAST output file
[TXT]jp_rFhtK_I.coils.csv2015-04-17 17:40 432 COILS output in CSV format
[ ]jp_rFhtK_I.coilseq.lupas_142015-04-17 17:40 2.8KCOILS output, window length 14
[ ]jp_rFhtK_I.coilseq.lupas_212015-04-17 17:40 2.8KCOILS output, window length 21
[ ]jp_rFhtK_I.coilseq.lupas_282015-04-17 17:40 2.8KCOILS output, window length 28
[ ]jp_rFhtK_I.concise2015-04-17 17:40 64KPrediction: coiled-coil, solvent, alignment
[ ]jp_rFhtK_I.concise.blc2015-04-17 17:40 33KBLC format prediction and alignment data
[ ]jp_rFhtK_I.concise.fasta2015-04-17 17:40 33KPrediction: coiled-coil, solvent, alignment
[ ]jp_rFhtK_I.concise.pdf2015-04-17 17:40 195KPDF prediction and alignment data
[ ]jp_rFhtK_I.concise.ps2015-04-17 17:40 3.5MPrediction: coiled-coil, solvent, alignment
[ ]jp_rFhtK_I.fasta2015-04-17 17:37 80 Input query sequence in FASTA format
[ ]jp_rFhtK_I.full_MSA.fasta2015-04-17 17:39 409KFull MSA before JPred filters in FASTA
[TXT]jp_rFhtK_I.full_MSA.fasta.noGaps.html2015-04-17 17:40 290KFull MSA before JPred filters in FASTA
[TXT]jp_rFhtK_I.full_MSA.fasta.withGaps.html2015-04-17 17:40 1.4MFull MSA before JPred filters in FASTA
[ ]jp_rFhtK_I.hmm2015-04-17 17:40 13KHHMer2 profile of the alignment
[TXT]jp_rFhtK_I.html2015-04-17 17:40 114KHTML prediction and alignment data
[ ]jp_rFhtK_I.input2015-04-17 16:47 74 Raw input data for analysis
[ ]jp_rFhtK_I.jalview2015-04-17 17:40 2.1KJalview annotation file for alignment
[ ]jp_rFhtK_I.jnet2015-04-17 17:40 2.5KJnet secondary structure output
[TXT]jp_rFhtK_I.profile2015-04-17 17:39 11KPSIBLAST profile from alignment
[ ]jp_rFhtK_I.pssm2015-04-17 17:40 14KPSIBLAST PSSM for Jnet
[TXT]jp_rFhtK_I.results.html2016-02-15 12:19 38KJPred results page
[TXT]jp_rFhtK_I.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_rFhtK_I.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_rFhtK_I.seq2015-04-17 16:47 80 Sequence data file
[TXT]jp_rFhtK_I.simple.html2015-04-17 17:40 1.1KBrief HTML: sequence and prediction only
[TXT]jp_rFhtK_I.svg.html2015-04-17 17:40 30KJalview SVG summary of results
[ ]jp_rFhtK_I.tar.gz2015-04-17 17:40 713KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.