JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:45 4.9KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d1yzya1.name2015-04-17 16:48 0 Job name flag file
[ ]jp_JdBed1N.align2015-04-17 17:44 573KPSIBLAST alignment in FASTA format
[TXT]jp_JdBed1N.als2015-04-17 17:45 6.5KAlscript command file for PS/PDF output
[ ]jp_JdBed1N.blast.gz2015-04-17 17:42 3.5MCompressed PSIBLAST output file
[TXT]jp_JdBed1N.coils.csv2015-04-17 17:45 2.4KCOILS output in CSV format
[ ]jp_JdBed1N.coilseq.lupas_142015-04-17 17:45 17KCOILS output, window length 14
[ ]jp_JdBed1N.coilseq.lupas_212015-04-17 17:45 17KCOILS output, window length 21
[ ]jp_JdBed1N.coilseq.lupas_282015-04-17 17:45 17KCOILS output, window length 28
[ ]jp_JdBed1N.concise2015-04-17 17:45 1.1MPrediction: coiled-coil, solvent, alignment
[ ]jp_JdBed1N.concise.blc2015-04-17 17:45 571KBLC format prediction and alignment data
[ ]jp_JdBed1N.concise.fasta2015-04-17 17:45 577KPrediction: coiled-coil, solvent, alignment
[ ]jp_JdBed1N.concise.pdf2015-04-17 17:45 2.2KPDF prediction and alignment data
[ ]jp_JdBed1N.concise.ps2015-04-17 17:45 1.3KPrediction: coiled-coil, solvent, alignment
[ ]jp_JdBed1N.fasta2015-04-17 17:38 430 Input query sequence in FASTA format
[ ]jp_JdBed1N.full_MSA.fasta2015-04-17 17:43 5.8MFull MSA before JPred filters in FASTA
[TXT]jp_JdBed1N.full_MSA.fasta.noGaps.html2015-04-17 17:45 1.0MFull MSA before JPred filters in FASTA
[TXT]jp_JdBed1N.full_MSA.fasta.withGaps.html2015-04-17 17:45 20MFull MSA before JPred filters in FASTA
[ ]jp_JdBed1N.hmm2015-04-17 17:45 77KHHMer2 profile of the alignment
[TXT]jp_JdBed1N.html2015-04-17 17:45 868KHTML prediction and alignment data
[ ]jp_JdBed1N.input2015-04-17 16:48 419 Raw input data for analysis
[ ]jp_JdBed1N.jalview2015-04-17 17:45 9.2KJalview annotation file for alignment
[ ]jp_JdBed1N.jnet2015-04-17 17:45 15KJnet secondary structure output
[TXT]jp_JdBed1N.profile2015-04-17 17:41 66KPSIBLAST profile from alignment
[ ]jp_JdBed1N.pssm2015-04-17 17:44 89KPSIBLAST PSSM for Jnet
[TXT]jp_JdBed1N.results.html2016-02-15 12:19 175KJPred results page
[TXT]jp_JdBed1N.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_JdBed1N.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_JdBed1N.seq2015-04-17 16:48 430 Sequence data file
[TXT]jp_JdBed1N.simple.html2015-04-17 17:45 2.5KBrief HTML: sequence and prediction only
[TXT]jp_JdBed1N.svg.html2015-04-17 17:45 167KJalview SVG summary of results
[ ]jp_JdBed1N.tar.gz2015-04-17 17:45 7.4MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.