JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:24 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d1z0sa_.name2015-04-17 17:13 0 Job name flag file
[ ]jp_mu3DoMF.align2015-04-17 18:23 265KPSIBLAST alignment in FASTA format
[TXT]jp_mu3DoMF.als2015-04-17 18:23 4.7KAlscript command file for PS/PDF output
[ ]jp_mu3DoMF.blast.gz2015-04-17 18:21 9.5MCompressed PSIBLAST output file
[TXT]jp_mu3DoMF.coils.csv2015-04-17 18:23 1.5KCOILS output in CSV format
[ ]jp_mu3DoMF.coilseq.lupas_142015-04-17 18:23 10KCOILS output, window length 14
[ ]jp_mu3DoMF.coilseq.lupas_212015-04-17 18:23 10KCOILS output, window length 21
[ ]jp_mu3DoMF.coilseq.lupas_282015-04-17 18:23 10KCOILS output, window length 28
[ ]jp_mu3DoMF.concise2015-04-17 18:23 523KPrediction: coiled-coil, solvent, alignment
[ ]jp_mu3DoMF.concise.blc2015-04-17 18:23 265KBLC format prediction and alignment data
[ ]jp_mu3DoMF.concise.fasta2015-04-17 18:23 267KPrediction: coiled-coil, solvent, alignment
[ ]jp_mu3DoMF.concise.pdf2015-04-17 18:23 1.9MPDF prediction and alignment data
[ ]jp_mu3DoMF.concise.ps2015-04-17 18:23 33MPrediction: coiled-coil, solvent, alignment
[ ]jp_mu3DoMF.fasta2015-04-17 18:17 264 Input query sequence in FASTA format
[ ]jp_mu3DoMF.full_MSA.fasta2015-04-17 18:22 20MFull MSA before JPred filters in FASTA
[TXT]jp_mu3DoMF.full_MSA.fasta.noGaps.html2015-04-17 18:24 1.8MFull MSA before JPred filters in FASTA
[TXT]jp_mu3DoMF.full_MSA.fasta.withGaps.html2015-04-17 18:24 48MFull MSA before JPred filters in FASTA
[ ]jp_mu3DoMF.hmm2015-04-17 18:23 47KHHMer2 profile of the alignment
[TXT]jp_mu3DoMF.html2015-04-17 18:23 481KHTML prediction and alignment data
[ ]jp_mu3DoMF.input2015-04-17 17:13 255 Raw input data for analysis
[ ]jp_mu3DoMF.jalview2015-04-17 18:23 5.8KJalview annotation file for alignment
[ ]jp_mu3DoMF.jnet2015-04-17 18:23 9.1KJnet secondary structure output
[TXT]jp_mu3DoMF.profile2015-04-17 18:20 40KPSIBLAST profile from alignment
[ ]jp_mu3DoMF.pssm2015-04-17 18:23 53KPSIBLAST PSSM for Jnet
[TXT]jp_mu3DoMF.results.html2016-02-15 12:19 110KJPred results page
[TXT]jp_mu3DoMF.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_mu3DoMF.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_mu3DoMF.seq2015-04-17 17:13 264 Sequence data file
[TXT]jp_mu3DoMF.simple.html2015-04-17 18:23 1.9KBrief HTML: sequence and prediction only
[TXT]jp_mu3DoMF.svg.html2015-04-17 18:24 102KJalview SVG summary of results
[ ]jp_mu3DoMF.tar.gz2015-04-17 18:24 17MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.