JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:43 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d1z2ua1.name2015-04-17 16:13 0 Job name flag file
[ ]jp_5mf5Ugr.align2015-04-17 17:42 120KPSIBLAST alignment in FASTA format
[TXT]jp_5mf5Ugr.als2015-04-17 17:42 2.5KAlscript command file for PS/PDF output
[ ]jp_5mf5Ugr.blast.gz2015-04-17 17:40 9.9MCompressed PSIBLAST output file
[TXT]jp_5mf5Ugr.coils.csv2015-04-17 17:42 912 COILS output in CSV format
[ ]jp_5mf5Ugr.coilseq.lupas_142015-04-17 17:42 6.2KCOILS output, window length 14
[ ]jp_5mf5Ugr.coilseq.lupas_212015-04-17 17:42 6.2KCOILS output, window length 21
[ ]jp_5mf5Ugr.coilseq.lupas_282015-04-17 17:42 6.2KCOILS output, window length 28
[ ]jp_5mf5Ugr.concise2015-04-17 17:42 236KPrediction: coiled-coil, solvent, alignment
[ ]jp_5mf5Ugr.concise.blc2015-04-17 17:42 120KBLC format prediction and alignment data
[ ]jp_5mf5Ugr.concise.fasta2015-04-17 17:42 122KPrediction: coiled-coil, solvent, alignment
[ ]jp_5mf5Ugr.concise.pdf2015-04-17 17:42 828KPDF prediction and alignment data
[ ]jp_5mf5Ugr.concise.ps2015-04-17 17:42 14MPrediction: coiled-coil, solvent, alignment
[ ]jp_5mf5Ugr.fasta2015-04-17 16:39 162 Input query sequence in FASTA format
[ ]jp_5mf5Ugr.full_MSA.fasta2015-04-17 17:41 20MFull MSA before JPred filters in FASTA
[TXT]jp_5mf5Ugr.full_MSA.fasta.noGaps.html2015-04-17 17:43 2.0MFull MSA before JPred filters in FASTA
[TXT]jp_5mf5Ugr.full_MSA.fasta.withGaps.html2015-04-17 17:43 47MFull MSA before JPred filters in FASTA
[ ]jp_5mf5Ugr.hmm2015-04-17 17:42 28KHHMer2 profile of the alignment
[TXT]jp_5mf5Ugr.html2015-04-17 17:42 275KHTML prediction and alignment data
[ ]jp_5mf5Ugr.input2015-04-17 16:13 154 Raw input data for analysis
[ ]jp_5mf5Ugr.jalview2015-04-17 17:42 3.8KJalview annotation file for alignment
[ ]jp_5mf5Ugr.jnet2015-04-17 17:42 5.4KJnet secondary structure output
[TXT]jp_5mf5Ugr.profile2015-04-17 17:19 24KPSIBLAST profile from alignment
[ ]jp_5mf5Ugr.pssm2015-04-17 17:42 32KPSIBLAST PSSM for Jnet
[TXT]jp_5mf5Ugr.results.html2016-02-15 12:19 68KJPred results page
[TXT]jp_5mf5Ugr.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_5mf5Ugr.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_5mf5Ugr.seq2015-04-17 16:13 162 Sequence data file
[TXT]jp_5mf5Ugr.simple.html2015-04-17 17:42 1.4KBrief HTML: sequence and prediction only
[TXT]jp_5mf5Ugr.svg.html2015-04-17 17:43 60KJalview SVG summary of results
[ ]jp_5mf5Ugr.tar.gz2015-04-17 17:43 15MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.